View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_114 (Length: 250)
Name: NF19927_low_114
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_114 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 31611904 - 31612140
Alignment:
| Q |
1 |
ctatttgtagtttctttacaaatgatttaataaaacttcttcatttgctcttcnnnnnnntgaccttgcaaacaaattataattgaaatacaattaacaa |
100 |
Q |
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| T |
31611904 |
ctatttgtagtttctttacaaatgatttaataaaacttcttcatttgctcttcaaaaaaatgaccttgcaaacaaattataattgaaatacaattaacaa |
31612003 |
T |
|
| Q |
101 |
ggatgtaagaaatgaataaaatagtatctctttcgtcctcttgagttacaaattagaatctaaaacactgaaatctagatatatgtggttcaaatgtgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31612004 |
ggatgtaagaaatgaataaaatagtatctctttcgtcctcttgagttacaaattagaatctaaaacactgaaatctagatatatgtagttcaaatgtgtg |
31612103 |
T |
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| Q |
201 |
taaataaaatttagttactgat-aaggcctaaatata |
236 |
Q |
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|||||||||||||||||||||| ||| |||||||||| |
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| T |
31612104 |
taaataaaatttagttactgataaagccctaaatata |
31612140 |
T |
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