View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_115 (Length: 250)
Name: NF19927_low_115
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_115 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 45384444 - 45384207
Alignment:
| Q |
1 |
tatgaatcaacatgttcatgtttgcaatagatttctcaattattcaaaaaccactgttccggtccaagnnnnnnnttacaaaggattaattgacaaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
45384444 |
tatgaatcaacatgttcatgtttgcaatagatttctcaattattcaaaaaccactgtgcccgtccaacaaaaaaattacaaaggattaattgacaaaatt |
45384345 |
T |
|
| Q |
101 |
aataagaacgtagattgaagaatcctagtaagaaaaacaagaaacataatagggtataatgtataaagcttccacagatgctagcttggttttggccata |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45384344 |
aataagaacatagattgaagaatcctagtaagaaaaacaagaaacataatagggtataatgtataaagcttccacagatgctaggttggttttggccata |
45384245 |
T |
|
| Q |
201 |
gtatttatcattgttgattttgctttaaattccattca |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45384244 |
gtatttatcattgttgattttgctttaaattccattca |
45384207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University