View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_117 (Length: 249)
Name: NF19927_low_117
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20983170 - 20983413
Alignment:
| Q |
1 |
tgctttttcaattatgtacctctcaagtataacccatctggagaagaaagtggaacctccatgaaatgaggatgttcaagttgcctatttctacaaagat |
100 |
Q |
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| T |
20983170 |
tgctttttcaattatgtacctctcaagtataacccatctggagaagaaagtggaacctccatgaaatgaggatgttcaagttgcctatttctacaaagat |
20983269 |
T |
|
| Q |
101 |
aataaatcacaggcaccttcaaattatgttgatattttggtgctttctcagtccaaaccttagctttatcaggactcacttgtctatacttcttcatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20983270 |
aataaatcacaggcaccttcaaattatgttgatattttggtgctttctcagtccaaaccttagccctatcaggactcacttgtctatacttcttcatcct |
20983369 |
T |
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| Q |
201 |
accctccattctcacatgcacaacaccaccactacctatgctac |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20983370 |
accctccattctcacatgcacaacaccaccactacctatactac |
20983413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 35459748 - 35459645
Alignment:
| Q |
17 |
tacctctcaagtataacccatctggagaagaaagtggaacctccatgaaatgaggatgttcaagttgcctatttctacaaagataataaatcacaggcac |
116 |
Q |
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||||||||||| | || ||||| || || |||| ||||||||||||||||||||||||||||| || ||||| || |||||||| |||| ||||| || |
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| T |
35459748 |
tacctctcaagaacaaaccatcaggtgatgaaataggaacctccatgaaatgaggatgttcaagctgtctattcctgcaaagatagtaaacaacaggaac |
35459649 |
T |
|
| Q |
117 |
cttc |
120 |
Q |
| |
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|||| |
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| T |
35459648 |
cttc |
35459645 |
T |
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