View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_12 (Length: 590)
Name: NF19927_low_12
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_12 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 173 - 581
Target Start/End: Complemental strand, 18940311 - 18939903
Alignment:
| Q |
173 |
ccctctgaattacatgagctttaattcggcaactatttagcgtagaatcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatcaattt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18940311 |
ccctctgaattacatgagctttaattcggcaactatttagcgtagaatcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatcaattt |
18940212 |
T |
|
| Q |
273 |
gctcgattggtcgttgttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18940211 |
gctcgattggtcgttgttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaattaaacagggttgtgagtttctgttttatataa |
18940112 |
T |
|
| Q |
373 |
tttctagcatgagattatatatttttatggtgtgttttttcatgacgttaagctctgtatttcacnnnnnnnngttacttatagtggttgttttggtttt |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
18940111 |
tttctagcatgagattatatatttttatggtgtgttttttcatgatgttaagctctgtatttcacttttttttgttacttatggtggttgttttggtttt |
18940012 |
T |
|
| Q |
473 |
tgttctaatcatggcaaataatttgagttcggtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaccaaaacaattcacttgctttttg |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18940011 |
tgttctaatcatggcaaataatttgagttcggtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaccaaaacaattcacttgctttttg |
18939912 |
T |
|
| Q |
573 |
aatattctt |
581 |
Q |
| |
|
||| ||||| |
|
|
| T |
18939911 |
aattttctt |
18939903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 446 - 575
Target Start/End: Original strand, 11504367 - 11504496
Alignment:
| Q |
446 |
gttacttatagtggttgttttggtttttgttctaatcatggcaaataatttgagttcggtgtttcaaagtgagcttgaaaatctatagaaagaggctatg |
545 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11504367 |
gttacttatggtggttgttatggtttttgttctaatcatggcaaataatttgagttcagtgtttcaaagtgagcttgaaaatctatagaaagaggctatg |
11504466 |
T |
|
| Q |
546 |
agaccaaaacaattcacttgctttttgaat |
575 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
11504467 |
agaccaatacaattcacttgctttttgaat |
11504496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 18940483 - 18940377
Alignment:
| Q |
1 |
gaaccgaaggatgaagttctttcgccgagattcgtgccgaaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgttattggtctccttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18940483 |
gaaccgaaggatgaagttctttcgccgagattcgtgctaaaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgttattggtctccttg |
18940384 |
T |
|
| Q |
101 |
attcttc |
107 |
Q |
| |
|
||||||| |
|
|
| T |
18940383 |
attcttc |
18940377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 186 - 581
Target Start/End: Complemental strand, 7828679 - 7828286
Alignment:
| Q |
186 |
atgagctttaattcggcaactatttagcgtagaatcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatcaatttgctcgattggtcg |
285 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |
|
|
| T |
7828679 |
atgagctttaatttggcaactatttggtgtagaatcaaaatagagcaattgggttttcaagtactgcagttttgaaccaatcaatttgctcgattgggca |
7828580 |
T |
|
| Q |
286 |
ttgttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgag |
385 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
7828579 |
ttgttaatttttgttttgaaaagtctttagctttggttaaaaatagttgaagaactaaacggggctgtgagtttctgttttatataatttctagcatggg |
7828480 |
T |
|
| Q |
386 |
attatatatttttatggtgtgttttttcatgacgttaagctctgtatttcacnnnnnnnngttacttatagtggttgttttggtttttgttctaatcatg |
485 |
Q |
| |
|
| || ||||||| ||||||||| ||||||| ||| | ||||||||||||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
7828479 |
aagatgtattttttgggtgtgtttgttcatgatgtttaactctgtatttcacttttttt--tttgttatggtggttgttttggtttttgttctaatcatg |
7828382 |
T |
|
| Q |
486 |
gcaaataatttgagttcggtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaccaaaacaattcacttgctttttgaatattctt |
581 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7828381 |
gcaaataatttgagttcaatgtttcgaagtgagcttgacaatctatagaaagaggctatgagaccaaaacaattcacttgctttttgaattttctt |
7828286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 220 - 581
Target Start/End: Complemental strand, 52311190 - 52310824
Alignment:
| Q |
220 |
tcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaatttttgttttgaaaagatttaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||| |||||||||| || ||| ||| ||| || |
|
|
| T |
52311190 |
tcaaaatagagcaattgggttttcaagttctgcagttttgaaccaattggtaaatttgctagattggtggttgttaattcttttttagaattttttttag |
52311091 |
T |
|
| Q |
316 |
ctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttttttcat |
415 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||| |||||||| || ||||||| | | || ||||| |
|
|
| T |
52311090 |
ctttggttaaaaattgttgaataactaaacagggctgtgagtttctgttttaaataatttctaacatgagatgatgtattttttgtatctattagttcat |
52310991 |
T |
|
| Q |
416 |
gacgttaagctctgtatttcacnnnnnnnngt---tacttatagtggttgttttggtttttgttctaatcatggcaaataatttgagttcggtgtttcaa |
512 |
Q |
| |
|
|| | | | ||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
52310990 |
gatgcttaactctgtatttcacttttttttttccttacttatggtggttgttttggtttttgttctaatcatgacaaataatttgattt-ggtgtttcaa |
52310892 |
T |
|
| Q |
513 |
agtgagcttgaaaatctatagaaagaggctatgagaccaaaacaattcacttgctttttgaatattctt |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||| ||||| |
|
|
| T |
52310891 |
agtgagcttgaaaatctatagaaagaggctatgagaacatta-aattcactttctttttgaatcttctt |
52310824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 220 - 581
Target Start/End: Original strand, 53689708 - 53690073
Alignment:
| Q |
220 |
tcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaatttttgttttgaaaagatttaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||| |||||||||| || ||| |||||| ||| || |
|
|
| T |
53689708 |
tcaaaatagagcaattgggttttcaagttctacagttttgaaccaattggtaaatttgctagattggtggttgttaattcttttttggaaaagtttttag |
53689807 |
T |
|
| Q |
316 |
ctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttttttcat |
415 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||| || ||||||| | | || ||||| |
|
|
| T |
53689808 |
ctttggttaaaaattgttgaataactaaacagggctgtgagtttctgttttaaataatttctgacatgagatgatgtattttttgtatctattagttcat |
53689907 |
T |
|
| Q |
416 |
gacgttaagctctgtatttcac--nnnnnnnngttacttatagtggttgttttggtttttgttctaatcatggcaaataatttgagttcggtgtttcaaa |
513 |
Q |
| |
|
|||| | | ||||||||||||| |||| ||| |||| ||||||||||||||||||||||||| |||||||| || || ||||||||||| |
|
|
| T |
53689908 |
gacgcttaactctgtatttcacttttttttcccttacctatggtggctgttttggtttttgttctaatcatgaaaaataattaga-tttggtgtttcaaa |
53690006 |
T |
|
| Q |
514 |
gtgagcttgaaaatctatagaaagaggctatgagaccaaaacaattcacttgctttttgaatattctt |
581 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | | ||||||||| |||||||||| ||||| |
|
|
| T |
53690007 |
gtgagcttgaaaatctatagaaagatgctatgagaac-attgaattcactttctttttgaatcttctt |
53690073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 232 - 378
Target Start/End: Original strand, 31688537 - 31688685
Alignment:
| Q |
232 |
aattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaat |
329 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||| || || ||||||||||||||| || ||| |||||| || ||||| |
|
|
| T |
31688537 |
aattgggttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat |
31688636 |
T |
|
| Q |
330 |
agttgaagaactaaacagggttgtgagtttctgttttatataatttcta |
378 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||||||||||||| |
|
|
| T |
31688637 |
agttgaagaacttaatggggttgtgagtttttattttatataatttcta |
31688685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 232 - 378
Target Start/End: Complemental strand, 31912039 - 31911891
Alignment:
| Q |
232 |
aattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaat |
329 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||||||||| || || ||||||||||||||| || ||| |||||| || ||||| |
|
|
| T |
31912039 |
aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat |
31911940 |
T |
|
| Q |
330 |
agttgaagaactaaacagggttgtgagtttctgttttatataatttcta |
378 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||||||||||||| |
|
|
| T |
31911939 |
agttgaagaacttaatggggttgtgagtttttattttatataatttcta |
31911891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 232 - 378
Target Start/End: Complemental strand, 31945687 - 31945539
Alignment:
| Q |
232 |
aattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaat |
329 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||||||||| || || ||||||||||||||| || ||| |||||| || ||||| |
|
|
| T |
31945687 |
aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat |
31945588 |
T |
|
| Q |
330 |
agttgaagaactaaacagggttgtgagtttctgttttatataatttcta |
378 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||||||||||||| |
|
|
| T |
31945587 |
agttgaagaacttaatggggttgtgagtttttattttatataatttcta |
31945539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 12537746 - 12537670
Alignment:
| Q |
289 |
ttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttt |
365 |
Q |
| |
|
|||||||||||||||||||| || | |||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12537746 |
ttaatttttgttttgaaaagtttctacctttagttaaaaatagttgaagaactaaatggggttgtgagtttctgttt |
12537670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 31688748 - 31688793
Alignment:
| Q |
446 |
gttacttatagtggttgttttggtttttgttctaatcatggcaaat |
491 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
31688748 |
gttacttatgtaggttgttttggtttttgttctaatcatggaaaat |
31688793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 216 - 548
Target Start/End: Complemental strand, 35904 - 35574
Alignment:
| Q |
216 |
agaatcaaaatagagcaattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagattta |
313 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||| || || ||||||||||||||| || ||| |
|
|
| T |
35904 |
agaatcaaaatatagcaattgggttttcaaggtactatagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaatttttttt |
35805 |
T |
|
| Q |
314 |
agctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttttttc |
413 |
Q |
| |
|
|||||| || ||||||||||||||| | ||| ||||||||||||| |||||||||||||||||| ||| |||||| | |||| | | ||||| ||| |
|
|
| T |
35804 |
agctttagttcaaaatagttgaagaatttaacggggttgtgagtttttgttttatataatttctaatatgcgattatgtctttt--ttgcatgtttcttc |
35707 |
T |
|
| Q |
414 |
atgacgttaagctctgtatttcacnnnnnnnngttacttatagtggttgttttggtttttgttctaatcatggcaaataatttgagttcggtgtttcaaa |
513 |
Q |
| |
|
|||| ||| | ||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||| |||| |
|
|
| T |
35706 |
atgatgtttaactctgtatttccc--ttttttgttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaa |
35609 |
T |
|
| Q |
514 |
gtgagcttgaaaatctatagaaagaggctatgaga |
548 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
35608 |
gtgagcttgaaaatctatacaaagatgctatgaga |
35574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 232 - 581
Target Start/End: Complemental strand, 42559 - 42213
Alignment:
| Q |
232 |
aattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaat |
329 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||||||||| || || ||||||||||||||| || ||| |||||| || ||||| |
|
|
| T |
42559 |
aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagctttagttcaaaat |
42460 |
T |
|
| Q |
330 |
agttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttttttcatgacgttaagctctg |
429 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||| ||| |||||| | |||| | | ||||||||||||| ||| | ||||| |
|
|
| T |
42459 |
agttgaagaacttaacggggttgtgagtttttgttttatataatttctaatatgcgattatgtctttt--ttgcatgttttttcatgatgtttaactctg |
42362 |
T |
|
| Q |
430 |
tatttcacnnnnnnnngttacttatagtggttgttttggtttttgttctaatcatggcaaataatttgagttcggtgtttcaaagtgagcttgaaaatct |
529 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
42361 |
tatttccc--ttttttgttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaagtgagcttgaaaatct |
42264 |
T |
|
| Q |
530 |
atagaaagaggctatgagaccaaaacaattcacttgctttttgaatattctt |
581 |
Q |
| |
|
||| ||||| ||||||||| | | | |||||||||||||||||| ||||| |
|
|
| T |
42263 |
atacaaagatgctatgagaac-attgagttcacttgctttttgaatcttctt |
42213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 232 - 581
Target Start/End: Original strand, 27444802 - 27445145
Alignment:
| Q |
232 |
aattgggttttcaagtgctgtagttttgaaccaatcaatttgctcgattggtcgtt-gttaatttttgttttgaaaagatttaagctttgattaaaaata |
330 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||| || ||| ||||| || |||||| |
|
|
| T |
27444802 |
aattgggttttcaagg--tgtagttttgaaccaatcaatttgctcgattcatcatttgttaatttttgtttttaattttttttagcttcagttcaaaata |
27444899 |
T |
|
| Q |
331 |
gttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttttttcatgacgttaagctctgt |
430 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||||||||||||||| ||| |||||| | ||||| | ||||| ||||||| ||| | |||||| |
|
|
| T |
27444900 |
gttgaagaacttaacggggttgtgagtttttgttttatataatttctaatatgcgattatgtctttttt--gcatgtttgttcatgatgtttaactctgt |
27444997 |
T |
|
| Q |
431 |
atttcacnnnnnnnngttacttatagtggttgttttggtttttgttctaatcatggcaaataatttgagttcggtgtttcaaagtgagcttgaaaatcta |
530 |
Q |
| |
|
||||| | ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
27444998 |
atttccctttttt--gttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaagtgagcttgaaaatcta |
27445095 |
T |
|
| Q |
531 |
tagaaagaggctatgagaccaaaacaattcacttgctttttgaatattctt |
581 |
Q |
| |
|
|| ||||| ||||||||| | | | |||||||||||||||||| ||||| |
|
|
| T |
27445096 |
tacaaagatgctatgagaac-attgagttcacttgctttttgaatcttctt |
27445145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 219 - 495
Target Start/End: Complemental strand, 20910208 - 20909922
Alignment:
| Q |
219 |
atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga |
309 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||||| |||| ||||||||||| ||||||||||| || ||| |||||| |
|
|
| T |
20910208 |
atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagt |
20910109 |
T |
|
| Q |
310 |
tttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttt |
409 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||| || ||||||||||||| ||||||||||||| |||||||| | ||||||| || | ||| |
|
|
| T |
20910108 |
ttta-gctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagatgaagtattttttgtgtctattt |
20910010 |
T |
|
| Q |
410 |
tttcatgacgttaagctctgtatttcac--nnnnnnnngttacttatagtggttgttttggtttttgttctaatcatggcaaataatt |
495 |
Q |
| |
|
||||||| ||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20910009 |
gttcatgatgtttaactctgtatttcacttttttttcccttacttatggtggttgttttggtttttgttctaatcatggcaaataatt |
20909922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 219 - 495
Target Start/End: Complemental strand, 20924656 - 20924370
Alignment:
| Q |
219 |
atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga |
309 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||||| |||| ||||||||||| ||||||||||| || ||| |||||| |
|
|
| T |
20924656 |
atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagt |
20924557 |
T |
|
| Q |
310 |
tttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttt |
409 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||| || ||||||||||||| ||||||||||||| |||||||| | ||||||| || | ||| |
|
|
| T |
20924556 |
ttta-gctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagatgaagtattttttgtgtctattt |
20924458 |
T |
|
| Q |
410 |
tttcatgacgttaagctctgtatttcac--nnnnnnnngttacttatagtggttgttttggtttttgttctaatcatggcaaataatt |
495 |
Q |
| |
|
||||||| ||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20924457 |
gttcatgatgtttaactctgtatttcacttttttttcccttacttatggtggttgttttggtttttgttctaatcatggcaaataatt |
20924370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 11382861 - 11382899
Alignment:
| Q |
200 |
ggcaactatttagcgtagaatcaaaatagagcaattggg |
238 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
11382861 |
ggcaactatttggtgtagaatcaaaatagagcaattggg |
11382899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 219 - 495
Target Start/End: Complemental strand, 42313324 - 42313037
Alignment:
| Q |
219 |
atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga |
309 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||| | |||| ||||||||||| ||||||||||| || ||| |||||| |
|
|
| T |
42313324 |
atcaaaatagagcaattgggttttcaggttttacagttttgaaccagttggtaaattggctcgattggtggttgttaatttatttattttttggaaaagt |
42313225 |
T |
|
| Q |
310 |
tttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatggtgtgttt |
409 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||| | |||||||||||||| ||||||||||||| || |||| || ||||||| | || | ||| |
|
|
| T |
42313224 |
ttta-gctttggttaaaaattgttgaagaactaaacatgattgtgagtttctgtgttatataatttctgatataagatgatgtatttttgt-gtctattt |
42313127 |
T |
|
| Q |
410 |
tttcatgacgttaagctctgtatttca----cnnnnnnnngttacttatagtggttgttttggtttttgttctaatcatggcaaataatt |
495 |
Q |
| |
|
||||||| ||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313126 |
gttcatgatgtttagctctgtatttcactttctttttttccttacttatggtggttgttttggtttttgttctaatcatggcaaataatt |
42313037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 446 - 548
Target Start/End: Original strand, 43227080 - 43227182
Alignment:
| Q |
446 |
gttacttatagtggttgttttggtttttgttctaatcatggcaaataatttgagttcggtgtttcaaagtgagcttgaaaatctatagaaagaggctatg |
545 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
43227080 |
gttacttatggtggttgttttggtttttgttcttatcatggcaaataatttgaatttggtgttacaaagtgagcttgagaatatatagaaagatgctatg |
43227179 |
T |
|
| Q |
546 |
aga |
548 |
Q |
| |
|
||| |
|
|
| T |
43227180 |
aga |
43227182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 219 - 376
Target Start/End: Complemental strand, 41327100 - 41326935
Alignment:
| Q |
219 |
atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga |
309 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||||| |||| ||||||||||| ||||||||||| || ||| |||||| |
|
|
| T |
41327100 |
atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagt |
41327001 |
T |
|
| Q |
310 |
tttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttttatataatttc |
376 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
41327000 |
ttta-gctttggttaaaaattgttgaagaactaaacatggttgtgagtttctgtgttatataatttc |
41326935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 495
Target Start/End: Complemental strand, 41326864 - 41326817
Alignment:
| Q |
447 |
ttacttatagtggttgttttggtttttgttctaatcatggcaaataatt |
495 |
Q |
| |
|
|||||||| || |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
41326864 |
ttacttatggtcgttgttttggtttt-gttctattcatggcaaataatt |
41326817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 28836 - 28912
Alignment:
| Q |
289 |
ttaatttttgttttgaaaagatttaagctttgattaaaaatagttgaagaactaaacagggttgtgagtttctgttt |
365 |
Q |
| |
|
|||||||||||||||||||| || | |||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28836 |
ttaatttttgttttgaaaagtttctacctttagttaaaaatagttgaagaactaaatggggttgtgagtttctgttt |
28912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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