View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_120 (Length: 247)

Name: NF19927_low_120
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_120
NF19927_low_120
[»] chr3 (19 HSPs)
chr3 (11-232)||(9561726-9561947)
chr3 (87-233)||(7324171-7324317)
chr3 (20-233)||(754349-754562)
chr3 (20-231)||(2476732-2476943)
chr3 (90-231)||(2502370-2502511)
chr3 (20-233)||(2635819-2636032)
chr3 (87-233)||(2644096-2644242)
chr3 (20-232)||(9565570-9565782)
chr3 (87-231)||(2631522-2631666)
chr3 (87-233)||(2492265-2492411)
chr3 (87-232)||(7442718-7442863)
chr3 (87-232)||(7333998-7334143)
chr3 (82-233)||(2658886-2659037)
chr3 (171-232)||(7318654-7318715)
chr3 (87-179)||(768120-768212)
chr3 (82-139)||(666992-667049)
chr3 (87-194)||(9594385-9594492)
chr3 (174-230)||(9608071-9608128)
chr3 (12-50)||(2492190-2492228)
[»] chr4 (1 HSPs)
chr4 (87-233)||(41456258-41456404)
[»] scaffold0097 (2 HSPs)
scaffold0097 (187-233)||(34231-34277)
scaffold0097 (81-148)||(34162-34229)
[»] chr2 (1 HSPs)
chr2 (20-141)||(33020414-33020535)
[»] scaffold0044 (1 HSPs)
scaffold0044 (33-192)||(89257-89416)
[»] chr5 (3 HSPs)
chr5 (166-230)||(20301681-20301746)
chr5 (166-230)||(20306094-20306159)
chr5 (166-230)||(20310498-20310563)
[»] chr7 (1 HSPs)
chr7 (166-233)||(39299223-39299291)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 9561947 - 9561726
Alignment:
Q  11 ttatactgttttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaatttggttgtttacgattctaagact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9561947 ttatactgttttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaagttggttgtttacgattctaagact 9561848  T
Q  111 ggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatatcaccttaagcattgattcaactgc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9561847 ggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatatcaccttaagcattgattcaactgc 9561748  T
Q  211 aacatatatatggttagttttt 232  Q
    ||||||||||||||||||||||    
T  9561747 aacatatatatggttagttttt 9561726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 7324317 - 7324171
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatat 186  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||    
T  7324317 ttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttgatat 7324218  T
Q  187 caccttaagcattgattcaactgcaacatatatatggttagtttttg 233  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||    
T  7324217 caccttaagctgggattcaactgcaacatatatatggttagtttttg 7324171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 754562 - 754349
Alignment:
Q  20 tttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaatttggttgtttacgattctaagactggtactttg 119  Q
    |||||||| || ||||||||||||||||||||||  |||| |||  |||  | |||  ||  | || ||||||||||| ||||| |||||||||||| ||    
T  754562 tttatatatttatgaggatgaccaactgctgctaaggttttatgcaatggaaggtggaaatatcaagttggttgtttatgattccaagactggtactctg 754463  T
Q  120 aatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatatcaccttaagcattgattcaactgcaacatatat 219  Q
    ||||||||||||||||||||||||||||| || ||| ||  | || ||||||||||||||||||||||||||||||||  |||||||||||||||||||     
T  754462 aatattcctgagtttcaaaacaactatgaacaaataggctcagatgtctacattgagagtttgatatcaccttaagcaaggattcaactgcaacatatac 754363  T
Q  220 atggttagtttttg 233  Q
    ||||||||||||||    
T  754362 atggttagtttttg 754349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 2476732 - 2476943
Alignment:
Q  20 tttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaatttggttgtttacgattctaagactggtactttg 119  Q
    |||||| | ||||||||||||||||||| || | |||| |  ||||||   ||||||||| |  || ||||||||||||||||| || |||||||||| |    
T  2476732 tttatacatttctgaggatgaccaactgttggtcgagtgtcttgagattgaaagtgacaatgataagttggttgtttacgattccaaaactggtacttcg 2476831  T
Q  120 aatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatatcaccttaagcattgattcaactgcaacatatat 219  Q
    ||||||||||||||||||||||| ||||| | ||||| |  |||| |||||||||||||||||||||||||||||||   ||||||||| ||||||||||    
T  2476832 aatattcctgagtttcaaaacaaatatgacctgatatactcaaatgtctacattgagagtttgatatcaccttaagctgggattcaactccaacatatat 2476931  T
Q  220 atggttagtttt 231  Q
    ||||||||||||    
T  2476932 atggttagtttt 2476943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 2502370 - 2502511
Alignment:
Q  90 gttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatca--gatatgccaaaatttctacattgagagtttgatatc 187  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||  || ||||  || ||||||||||||||||||||||||    
T  2502370 gttgtttatgattccaaaactggcactttgaatattcctgagtttcaaaacaactatgagcatagagatgc--aattttctacattgagagtttgatatc 2502467  T
Q  188 accttaagcattgattcaactgcaacatatatatggttagtttt 231  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  2502468 accttaagcatggattcaactgcaacatatatatggttagtttt 2502511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 2635819 - 2636032
Alignment:
Q  20 tttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaatttggttgtttacgattctaagactggtactttg 119  Q
    |||||||| |||||||||||||||||| || ||  ||| | |||||||   |||||   |  |||| ||||||||||||||||| || | |||||||||     
T  2635819 tttatatatttctgaggatgaccaactactcctgcagtgttatgagattgaaagtggagatatgaagttggttgtttacgattccaaaaatggtacttta 2635918  T
Q  120 aatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatatcaccttaagcattgattcaactgcaacatatat 219  Q
    |||||||| |||||||||||||||||||| ||||||| || |||| ||||||||| ||||||||||||||||||||    |||||| |||||||||||||    
T  2635919 aatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgcgagtttgatatcaccttaagttgggattcatctgcaacatatat 2636018  T
Q  220 atggttagtttttg 233  Q
    ||||||||||||||    
T  2636019 atggttagtttttg 2636032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 2644242 - 2644096
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatat 186  Q
    ||||||||||| ||||| || ||||| || |||||||||||||||||||||||||| ||||| | ||||| |  |||| |||||||||||||||||||||    
T  2644242 ttggttgtttatgattccaaaactggcacattgaatattcctgagtttcaaaacaaatatgacctgatatactcaaatgtctacattgagagtttgatat 2644143  T
Q  187 caccttaagcattgattcaactgcaacatatatatggttagtttttg 233  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||    
T  2644142 caccttaagctgggattcaactgcaacatatatatggttagtttttg 2644096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 9565782 - 9565570
Alignment:
Q  20 tttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaatttggttgtttacgattctaagactggtactttg 119  Q
    |||||||| |||||| |||||||||||| || ||||||||||  |  ||| |||| |||   | || ||||||||||| ||||| ||||| |||||||||    
T  9565782 tttatatatttctgacgatgaccaactgttggtagagtttaagaaattgcaaagtaacagtatcaagttggttgtttatgattccaagaccggtactttg 9565683  T
Q  120 aatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatatcaccttaagcattgattcaactgcaacatatat 219  Q
    ||||||||||||||||||||||||||| | ||| ||  |  |||| |||||||||||||||||||||||||||| |||  ||||||| ||||||||  ||    
T  9565682 aatattcctgagtttcaaaacaactataaacaggtagcctcaaatgtctacattgagagtttgatatcaccttaggcacggattcaaatgcaacattgat 9565583  T
Q  220 atggttagttttt 232  Q
    |||||||||||||    
T  9565582 atggttagttttt 9565570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 2631522 - 2631666
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatat 186  Q
    |||||||| |||||||| || ||||||| ||| ||||||| ||||||||||||||||||||| || |||| ||||||  |||||||||||||||| ||||    
T  2631522 ttggttgtctacgattccaaaactggtatttttaatattcttgagtttcaaaacaactatgaacatatatcccaaaaagtctacattgagagtttaatat 2631621  T
Q  187 caccttaagcattgattcaactgcaacatatatatggttagtttt 231  Q
    ||||||||||   ||||||||||||||||||| ||||||||||||    
T  2631622 caccttaagctgggattcaactgcaacatatacatggttagtttt 2631666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 87 - 233
Target Start/End: Original strand, 2492265 - 2492411
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatat 186  Q
    ||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||| | |  || |  |||| |||||||||||||||||||||    
T  2492265 ttggttgtttatgattccaagactgatactttgaatattccagagtttcaaaacaactatgaaccggaatactcaaatgtctacattgagagtttgatat 2492364  T
Q  187 caccttaagcattgattcaactgcaacatatatatggttagtttttg 233  Q
    ||||||||||   |||||||||||  |||||||||||||||||||||    
T  2492365 caccttaagctgggattcaactgcggcatatatatggttagtttttg 2492411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 7442863 - 7442718
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatat 186  Q
    |||| |||||| ||||| ||||| |||||||||||||||||||||||| |||| | |||||| | ||||| |  |||| |||||||||||||||||||||    
T  7442863 ttggctgtttatgattccaagacgggtactttgaatattcctgagtttgaaaaaacctatgaaccgatatactcaaatgtctacattgagagtttgatat 7442764  T
Q  187 caccttaagcattgattcaactgcaacatatatatggttagttttt 232  Q
    | || |||||   |||||||| ||||||||||||||||||||||||    
T  7442763 cgccctaagctgggattcaacggcaacatatatatggttagttttt 7442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 7334143 - 7333998
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatat 186  Q
    ||||||||||| ||| | || ||||||||||| ||||| ||||||||||||||||||||| | | ||||  |  |||| |||||||||||||||||||||    
T  7334143 ttggttgtttatgatcccaaaactggtactttaaatatccctgagtttcaaaacaactataaactgatagactcaaatgtctacattgagagtttgatat 7334044  T
Q  187 caccttaagcattgattcaactgcaacatatatatggttagttttt 232  Q
    | || |||||   |||||||| ||||||||||||||||||||||||    
T  7334043 cgccctaagctgggattcaacggcaacatatatatggttagttttt 7333998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 2659037 - 2658886
Alignment:
Q  82 tgaatttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagata--tgccaaaatttctacattgagagt 179  Q
    |||| ||||||||||| ||||||||  |||| || |||||| |||||| ||||| |||||||||| | || | |  |||| || |  |||||||||||||    
T  2659037 tgaagttggttgtttatgattctaaagctggcacattgaattttcctgtgtttcgaaacaactataaacatacacatgccgaagt--ctacattgagagt 2658940  T
Q  180 ttgatatcaccttaagcattgattcaactgcaacatatatatggttagtttttg 233  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2658939 ctcatatcaccttaagcattgattcaactgcaacatatatatggttagtttttg 2658886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 7318715 - 7318654
Alignment:
Q  171 attgagagtttgatatcaccttaagcattgattcaactgcaacatatatatggttagttttt 232  Q
    ||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||||    
T  7318715 attgagagtttaatatcaccttaagctgggattcaactgcaacatatatatggttagttttt 7318654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 768212 - 768120
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagt 179  Q
    ||||||||||||||||| || |||| |||||| ||||||| |||||||||||||||||||| ||||||   || |||  ||||||||||||||    
T  768212 ttggttgtttacgattccaaaactgctacttttaatattcttgagtttcaaaacaactatgctcagatgaacccaaaagtctacattgagagt 768120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 667049 - 666992
Alignment:
Q  82 tgaatttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaa 139  Q
    |||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  667049 tgaagttggttgtttatgattccaagactagtactttgaatattcctgagtttcaaaa 666992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 9594492 - 9594385
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatat 186  Q
    |||| |||||||||||| || |||| |||||| ||||||| ||||||||||||||||| || |||||    || ||   |||||||||||||| | ||||    
T  9594492 ttggctgtttacgattccaaaactgttacttttaatattcttgagtttcaaaacaactgtgctcagaagcacccaatagtctacattgagagtctcatat 9594393  T
Q  187 caccttaa 194  Q
    ||||||||    
T  9594392 caccttaa 9594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 9608128 - 9608071
Alignment:
Q  174 gagagtttgatatcaccttaagcat-tgattcaactgcaacatatatatggttagttt 230  Q
    |||||||||||||||||||||||||  ||||||| ||| |||||||||| ||||||||    
T  9608128 gagagtttgatatcaccttaagcatgagattcaagtgctacatatatattgttagttt 9608071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 2492190 - 2492228
Alignment:
Q  12 tatactgttttatatagttctgaggatgaccaactgctg 50  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  2492190 tatactgtttcatatatttctgaggatgaccaactgctg 2492228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 233
Target Start/End: Original strand, 41456258 - 41456404
Alignment:
Q  87 ttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatat 186  Q
    ||||||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||| | || |  ||  ||| |||||||||||||||| ||||    
T  41456258 ttggttgtttatgatttcaagattggtactttgaatattcctgagtttcaaaacaactatgaacggacagaccctaatatctacattgagagtttaatat 41456357  T
Q  187 caccttaagcattgattcaactgcaacatatatatggttagtttttg 233  Q
    |||||||||||   |||||| |||||| |  ||||||||| ||||||    
T  41456358 caccttaagcacgaattcaaatgcaacgttgatatggttaatttttg 41456404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 34231 - 34277
Alignment:
Q  187 caccttaagcattgattcaactgcaacatatatatggttagtttttg 233  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  34231 caccttaagcatggattcaactgcaacatatatatggttagtttttg 34277  T

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Target: scaffold0097; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 34162 - 34229
Alignment:
Q  81 gtgaatttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatga 148  Q
    ||||||||||||||||| ||| | || ||||| |||| |||||||||| ||||||||||| |||||||    
T  34162 gtgaatttggttgtttatgataccaaaactggcacttcgaatattcctcagtttcaaaacgactatga 34229  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 33020414 - 33020535
Alignment:
Q  20 tttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaatttggttgtttacgattctaagactggtactttg 119  Q
    |||||||| |||||||||||| ||| ||||| | || ||||| ||| ||  |||||  ||| |||| ||||||||||||||||| ||   ||||||||||    
T  33020414 tttatatatttctgaggatgaacaattgctgatggactttaaggagttggaaagtggtaaattgaagttggttgtttacgattccaaagatggtactttg 33020513  T
Q  120 aatattcctgagtttcaaaaca 141  Q
    || ||||||||| |||||||||    
T  33020514 aagattcctgagattcaaaaca 33020535  T

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Target: scaffold0044 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 89257 - 89416
Alignment:
Q  33 gaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaatttggttgtttacgattctaagactggtactttgaatattcctgagt 132  Q
    ||||||||| || ||||| | || ||| ||||| || |||||  |||| |||| ||||||||||| ||||| || | |||||||||||| ||||||| |     
T  89257 gaggatgacaaaatgctgatggaattttatgagttgggaagtagcaaattgaaattggttgtttatgattcaaaaaatggtactttgaagattcctgtga 89356  T
Q  133 ttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttgatatcacctt 192  Q
    ||||||||| | ||  || |||   || |||  |||||||||||||||||||||||||||    
T  89357 ttcaaaacatcaatcgtcggatggacccaaaagtctacattgagagtttgatatcacctt 89416  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 20301681 - 20301746
Alignment:
Q  166 tctacattgagagtttgatatcaccttaagcat-tgattcaactgcaacatatatatggttagttt 230  Q
    |||||||||||||||| ||||||||||||||||  || ||| |||||||||| |||||||||||||    
T  20301681 tctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttagttt 20301746  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 20306094 - 20306159
Alignment:
Q  166 tctacattgagagtttgatatcaccttaagcat-tgattcaactgcaacatatatatggttagttt 230  Q
    |||||||||||||||| ||||||||||||||||  || ||| |||||||||| |||||||||||||    
T  20306094 tctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttagttt 20306159  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 20310498 - 20310563
Alignment:
Q  166 tctacattgagagtttgatatcaccttaagcat-tgattcaactgcaacatatatatggttagttt 230  Q
    |||||||||||||||| ||||||||||||||||  || ||| |||||||||| |||||||||||||    
T  20310498 tctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttagttt 20310563  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 39299223 - 39299291
Alignment:
Q  166 tctacattgagagtttgatatcaccttaagcat-tgattcaactgcaacatatatatggttagtttttg 233  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||| ||| || || ||||||||||||||    
T  39299223 tctacattgagagcttgatattaccttaagcatgagattcaactacaagatctacatggttagtttttg 39299291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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