View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_131 (Length: 236)
Name: NF19927_low_131
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_131 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 41807607 - 41807716
Alignment:
| Q |
112 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
211 |
Q |
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| T |
41807607 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
41807706 |
T |
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| Q |
212 |
aggatcatct |
221 |
Q |
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| T |
41807707 |
aggatcatct |
41807716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 42031038 - 42030929
Alignment:
| Q |
112 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
211 |
Q |
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| T |
42031038 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
42030939 |
T |
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| Q |
212 |
aggatcatct |
221 |
Q |
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|||||||||| |
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| T |
42030938 |
aggatcatct |
42030929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41807496 - 41807554
Alignment:
| Q |
1 |
tccctttcctgttcccaagttataaacctcacaacctgtatgcagacatgaaattttac |
59 |
Q |
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| T |
41807496 |
tccctttcctgttcccaagttataaacctcacaacctgtatgcagacatgaaattttac |
41807554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42031149 - 42031091
Alignment:
| Q |
1 |
tccctttcctgttcccaagttataaacctcacaacctgtatgcagacatgaaattttac |
59 |
Q |
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| T |
42031149 |
tccctttcctgttcccaagttataaacctcacaacctgtatgcagacatgaaattttac |
42031091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2126645 - 2126685
Alignment:
| Q |
1 |
tccctttcctgttcccaagttataaacctcacaacctgtat |
41 |
Q |
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| T |
2126645 |
tccctttcctgttcccaagttataaacctcacaacctgtat |
2126685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2131234 - 2131273
Alignment:
| Q |
1 |
tccctttcctgttcccaagttataaacctcacaacctgta |
40 |
Q |
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| T |
2131234 |
tccctttcctgtccccaagttataaacgtcacaacctgta |
2131273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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