View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_132 (Length: 236)
Name: NF19927_low_132
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_132 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28105406 - 28105189
Alignment:
| Q |
1 |
tttctagagctgaatgaagaagagtatttagatgggttgtttctgttctgagaaagggcccttaagagtgtggtcgttggtgtttagatggcttggtatt |
100 |
Q |
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| T |
28105406 |
tttctagagctgaatgaagatgagtatttagatgggttgtttctgttctgagaaagggccctta-gagtgtggccgttggtgtttagatgggttggtatt |
28105308 |
T |
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| Q |
101 |
ggtttt-attactccatcaaaccttttgtttttgtacatttggaatgttttataggagagtctcggtccaagaagtttagaaggggttattggttaattt |
199 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28105307 |
ggtttttattactccatcaaacctttt--ttttgtacatttggaatgttttataggagagtctcggtcgaagaagtttagaaggggttattggttaattt |
28105210 |
T |
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| Q |
200 |
ggcactggtttgggttattct |
220 |
Q |
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||||||||||||||||||||| |
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| T |
28105209 |
ggcactggtttgggttattct |
28105189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 28088173 - 28088382
Alignment:
| Q |
1 |
tttctagagctgaatgaagaagagtatttagatgggttgtttctgttctgagaaagggcccttaagagtgtggtcgttggtgtttagatggcttggtatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28088173 |
tttctagagctgaatgaagaagagtatttagatgggttgtttctgttctgagaaagggcccttaagagtgtggtcgttagtgtttagatggcttggtatt |
28088272 |
T |
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| Q |
101 |
ggttttattactccatcaaaccttttgtttttgtacatttggaatgttttataggagagtctcggtccaagaagtttagaaggggttattggttaatttg |
200 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||| || ||||| |||||||| |||||||||||||| | |
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| T |
28088273 |
ggttttattactccatcaaac-----ttttttctacatttggaatgttttatagaggaggctcagttgtagaagcttagaaggagttattggttaattcg |
28088367 |
T |
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| Q |
201 |
gcactggtttgggtt |
215 |
Q |
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||||||||||||||| |
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| T |
28088368 |
gcactggtttgggtt |
28088382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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