View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_133 (Length: 236)
Name: NF19927_low_133
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_133 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 48357191 - 48357408
Alignment:
| Q |
19 |
aaaatagggcagggaaccacagcagaaattcataggggaacatggcgtggatttgatgtggcagtgaagtgcatttcacctgaattctttcgcacaaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48357191 |
aaaatagggcagggaaccacagcagaaattcataggggaacatggcgtggatttgatgtggcagtgaagtgcatttcacctgaattctttcgcacaaatg |
48357290 |
T |
|
| Q |
119 |
caaacggtgttgaattctttgctcaagaggttgaaactctctcaaagcaacgccacaggtttgtgcttaatctaatgggtgcatgtcttgaccctcctaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48357291 |
caaacggtgttgaattctttgctcaagaggttgaaactctctcaaagcaacgccacaggtttgtgcttaatctaatgggtgcatgtcttgaccctcctaa |
48357390 |
T |
|
| Q |
219 |
tcatgcttgggttgttac |
236 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
48357391 |
tcatgcttgggtggttac |
48357408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University