View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_135 (Length: 236)
Name: NF19927_low_135
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_135 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37154480 - 37154702
Alignment:
| Q |
1 |
tggactgcacatgtattttggacatactattgtgtagcaaggttgtactttctttccaaattctttggacttgcaattgcaaactatgtatgattatacg |
100 |
Q |
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| T |
37154480 |
tggactgcacatgtattttggacatactattgtgtagcaaggttgtactttctttccaaattctttggacttgcaattgcaaactatgtatgattatatg |
37154579 |
T |
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| Q |
101 |
tttcatatgttctaactcaatctcactcatcaattgttggcctttgacaacagaacaaagaggtttggactggttttcaagattgcggcgttgatatgtt |
200 |
Q |
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| T |
37154580 |
tttcatatgttctaactcaatctcactcatcaattgttggcctttgaaaacagaacaaagaggtttggactggttttcaagattgcggcgttgatatgtt |
37154679 |
T |
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| Q |
201 |
tgccggttcctttgttacttttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
37154680 |
tgccggttcctttgttacttttg |
37154702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37199835 - 37200057
Alignment:
| Q |
1 |
tggactgcacatgtattttggacatactattgtgtagcaaggttgtactttctttccaaattctttggacttgcaattgcaaactatgtatgattatacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37199835 |
tggactgcacatgtattttggacatactattgtgtagcaaggttgtactttctttccaaattctttggacttgcaattgcaaactatgtatgattatatg |
37199934 |
T |
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| Q |
101 |
tttcatatgttctaactcaatctcactcatcaattgttggcctttgacaacagaacaaagaggtttggactggttttcaagattgcggcgttgatatgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199935 |
tttcatatgttctaactcaatctcactcatcaattgttggcctttgaaaacagaacaaagaggtttggactggttttcaagattgcggcgttgatatgtt |
37200034 |
T |
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| Q |
201 |
tgccggttcctttgttacttttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
37200035 |
tgccggttcctttgttacttttg |
37200057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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