View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_138 (Length: 233)
Name: NF19927_low_138
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_138 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 8818301 - 8818388
Alignment:
| Q |
129 |
cttactaacccacaagcattttctacaagaaatacgtttgttttaattttctattgcaccaatggatacgtagaagtaagagttttcc |
216 |
Q |
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| T |
8818301 |
cttactaacccacaagcattttctacaagaaatacgtttgttttaattttctattgcaccaatggatacgtagaagtaagagttttcc |
8818388 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 8818191 - 8818255
Alignment:
| Q |
19 |
atgtgacggtaatacttcaagtcaaaaattgaggtagaacatccttcattctttaaatgtttcta |
83 |
Q |
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| T |
8818191 |
atgtgacaataatacttcaggtcaaaaattggggtataacatccttcattctttaaatgtttcta |
8818255 |
T |
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