View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_14 (Length: 570)

Name: NF19927_low_14
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_14
NF19927_low_14
[»] chr4 (7 HSPs)
chr4 (9-390)||(51210527-51210908)
chr4 (455-554)||(51210431-51210530)
chr4 (12-122)||(51197221-51197331)
chr4 (480-541)||(1312861-1312921)
chr4 (480-512)||(53792591-53792623)
chr4 (480-510)||(44249305-44249335)
chr4 (480-513)||(30377432-30377465)
[»] chr3 (3 HSPs)
chr3 (9-285)||(49739077-49739353)
chr3 (480-512)||(23808082-23808114)
chr3 (480-512)||(34414802-34414834)
[»] chr2 (4 HSPs)
chr2 (445-511)||(29503100-29503166)
chr2 (480-513)||(1810684-1810717)
chr2 (493-546)||(38388719-38388772)
chr2 (480-512)||(35379034-35379066)
[»] chr8 (3 HSPs)
chr8 (442-508)||(8062508-8062572)
chr8 (480-512)||(21653101-21653133)
chr8 (480-512)||(27028851-27028883)
[»] chr5 (3 HSPs)
chr5 (481-512)||(10272449-10272480)
chr5 (480-512)||(7984989-7985021)
chr5 (480-512)||(28413302-28413334)
[»] chr1 (8 HSPs)
chr1 (440-522)||(28482242-28482321)
chr1 (482-511)||(7575717-7575746)
chr1 (480-512)||(601061-601093)
chr1 (480-512)||(1232923-1232955)
chr1 (480-512)||(7472331-7472363)
chr1 (480-512)||(27820355-27820387)
chr1 (480-512)||(45975710-45975742)
chr1 (480-512)||(51695513-51695545)
[»] chr6 (1 HSPs)
chr6 (480-546)||(2455830-2455895)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Complemental strand, 51210908 - 51210527
Alignment:
Q  9 tatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51210908 tatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttg 51210809  T
Q  109 taaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51210808 taaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaa 51210709  T
Q  209 ctggtggatgatgacttgttgaccctgtcatctcagttgaagcaatatctccatccaagctagccttggccaacatttctccaagaaaaacaacaatgaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51210708 ctggtggatgatgacttgttgaccctgtcatctcagttgaagcaatatctccatccaagctagccttggccaacatttctccaagaaaaacaacaatgaa 51210609  T
Q  309 acagctgctgaagaaaattcactagtctgagttagcaactctcattcagctattccattaagcctcgtttggataaatagct 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51210608 acagctgctgaagaaaattcactagtctgagttagcaactctcattcagctattccattaagcctcgtttggataaatagct 51210527  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 455 - 554
Target Start/End: Complemental strand, 51210530 - 51210431
Alignment:
Q  455 agctataagatgtttctatcagctatatcttggagagtttatgaaaataagctgaaaaatagtttatgcacatgtagtaagttgtttccatacgtgtatg 554  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51210530 agctataagatgtttttatcagctatatcttggagagtttatgaaaataagctgaaaaatagtttatgcacatgtagtaagttgtttccatacgtgtatg 51210431  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 51197331 - 51197221
Alignment:
Q  12 agtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttgtaa 111  Q
    |||||| || ||||| ||||||||||||||||   |||  | |||||||||||||||||| |||| |||| | || || ||||||| ||||||||||||     
T  51197331 agtcatcaagggcattgagattccattcccaatagcaccaacagtcccaacaaacatcaataaatgatccaaagaatcagcaaatgagaaaagcttgtat 51197232  T
Q  112 aagggtactgt 122  Q
    |||||||||||    
T  51197231 aagggtactgt 51197221  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 541
Target Start/End: Original strand, 1312861 - 1312921
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaaatagtttatgcacatgtagtaagttgttt 541  Q
    |||||||||||||||||| |||||||||| |||| |||||||| | ||||| ||||||||||    
T  1312861 tatcttggagagtttatggaaataagctg-aaaacagtttatgaatatgtaataagttgttt 1312921  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 53792591 - 53792623
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||||||||||||||||||||||||||||||||    
T  53792591 tatcttggagagtttatgaaaataagctgaaaa 53792623  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 510
Target Start/End: Original strand, 44249305 - 44249335
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaa 510  Q
    |||||||||||||||||||||||||||||||    
T  44249305 tatcttggagagtttatgaaaataagctgaa 44249335  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 513
Target Start/End: Complemental strand, 30377465 - 30377432
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaaa 513  Q
    |||||||||||| |||||||||||||||||||||    
T  30377465 tatcttggagagcttatgaaaataagctgaaaaa 30377432  T

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Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 49739077 - 49739353
Alignment:
Q  9 tatagtcattaaaggcatagagattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttg 108  Q
    |||||||| |||||||||||||| ||||||||||||  |||  |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  49739077 tatagtcagtaaaggcatagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttg 49739176  T
Q  109 taaaagggtactgtcttattgctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaa 208  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||  ||||||||  ||||   | ||    
T  49739177 taaaagggtactgttttcttgctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacct---gaaa 49739273  T
Q  209 ctggt---ggatgatgacttgttgaccctgtcatctcagttgaagcaatatctccatccaagctagccttggccaacatt 285  Q
    |||||    |||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  49739274 ctggtagatgatgatgatttgttgaccctgtcatctcagttgcagtaatatctccgtccaagctagccttggccaacatt 49739353  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Complemental strand, 23808114 - 23808082
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||||||||||||||||||||||||| ||||||    
T  23808114 tatcttggagagtttatgaaaataagatgaaaa 23808082  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Complemental strand, 34414834 - 34414802
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||| ||||||||||||||||||||||||||||    
T  34414834 tatcatggagagtttatgaaaataagctgaaaa 34414802  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 511
Target Start/End: Complemental strand, 29503166 - 29503100
Alignment:
Q  445 ttttcataaaagctataagatgtttctatcagctatatcttggagagtttatgaaaataagctgaaa 511  Q
    |||||| | ||| ||||||||||||| || | ||||||||||||||| ||||| |||||||||||||    
T  29503166 ttttcaaagaagttataagatgtttccataaactatatcttggagagcttatggaaataagctgaaa 29503100  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 513
Target Start/End: Original strand, 1810684 - 1810717
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaaa 513  Q
    ||||||| ||||||||||||||||||||||||||    
T  1810684 tatcttgaagagtttatgaaaataagctgaaaaa 1810717  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 546
Target Start/End: Original strand, 38388719 - 38388772
Alignment:
Q  493 ttatgaaaataagctgaaaaatagtttatgcacatgtagtaagttgtttccata 546  Q
    ||||| ||||||||||||||| |||||||| ||||||  ||||||||| |||||    
T  38388719 ttatggaaataagctgaaaaacagtttatgaacatgtcataagttgttaccata 38388772  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Complemental strand, 35379066 - 35379034
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||||||||||| ||||||||||||||||||||    
T  35379066 tatcttggagagcttatgaaaataagctgaaaa 35379034  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 508
Target Start/End: Original strand, 8062508 - 8062572
Alignment:
Q  442 ttgttttcataaaagctataagatgtttctatcagctatatcttggagagtttatgaaaataagctg 508  Q
    ||||||||||| |||||||||||||||   || |||  |||||| ||||||||||||||||||||||    
T  8062508 ttgttttcatataagctataagatgttctcataagc--tatcttagagagtttatgaaaataagctg 8062572  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 21653101 - 21653133
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||||||||||| ||||||||||||||||||||    
T  21653101 tatcttggagagcttatgaaaataagctgaaaa 21653133  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 27028851 - 27028883
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||||||||||| ||||||||||||||||||||    
T  27028851 tatcttggagagcttatgaaaataagctgaaaa 27028883  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 512
Target Start/End: Complemental strand, 10272480 - 10272449
Alignment:
Q  481 atcttggagagtttatgaaaataagctgaaaa 512  Q
    ||||||||||||||||||||||||||||||||    
T  10272480 atcttggagagtttatgaaaataagctgaaaa 10272449  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 7984989 - 7985021
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    ||||||||||| |||||||||||||||||||||    
T  7984989 tatcttggagaatttatgaaaataagctgaaaa 7985021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Complemental strand, 28413334 - 28413302
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||||||||||||||||| ||||||||||||||    
T  28413334 tatcttggagagtttatggaaataagctgaaaa 28413302  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 522
Target Start/End: Complemental strand, 28482321 - 28482242
Alignment:
Q  440 agttgttttcataaaagctataagatgtttctatcagctatatcttggagagtttatgaaaataagctgaaaaatagtttatg 522  Q
    ||||| ||||||| |||||||||| ||||| ||| || |||  ||||||||| ||| ||||||||||| ||||||||||||||    
T  28482321 agttgctttcatataagctataagctgtttttataagttat--cttggagagcttacgaaaataagct-aaaaatagtttatg 28482242  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 511
Target Start/End: Complemental strand, 7575746 - 7575717
Alignment:
Q  482 tcttggagagtttatgaaaataagctgaaa 511  Q
    ||||||||||||||||||||||||||||||    
T  7575746 tcttggagagtttatgaaaataagctgaaa 7575717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 601061 - 601093
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||| ||||||||||||||||||||||||||||    
T  601061 tatcctggagagtttatgaaaataagctgaaaa 601093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Complemental strand, 1232955 - 1232923
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    ||||||||||| |||||||||||||||||||||    
T  1232955 tatcttggagaatttatgaaaataagctgaaaa 1232923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 7472331 - 7472363
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    |||||||||||| ||||||||||||||||||||    
T  7472331 tatcttggagagcttatgaaaataagctgaaaa 7472363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Complemental strand, 27820387 - 27820355
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    ||||||||||| |||||||||||||||||||||    
T  27820387 tatcttggagaatttatgaaaataagctgaaaa 27820355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 45975710 - 45975742
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    ||||||||||| |||||||||||||||||||||    
T  45975710 tatcttggagaatttatgaaaataagctgaaaa 45975742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Complemental strand, 51695545 - 51695513
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaa 512  Q
    ||||||||||| |||||||||||||||||||||    
T  51695545 tatcttggagaatttatgaaaataagctgaaaa 51695513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 2455830 - 2455895
Alignment:
Q  480 tatcttggagagtttatgaaaataagctgaaaaatagtttatgcacatgtagtaagttgtttccata 546  Q
    |||||||||||| ||||| ||||||| || |||||||||||||  |||||  |||||||||||||||    
T  2455830 tatcttggagagcttatggaaataagttg-aaaatagtttatgggcatgtcataagttgtttccata 2455895  T

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