View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_146 (Length: 219)
Name: NF19927_low_146
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_146 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 4359047 - 4359239
Alignment:
| Q |
11 |
gagagaagaatgtgaaagtttcatgtgactcagtaatctcgcaaaacagcaacaaatctaattgnnnnnnncaatatttttagtacctaaaatatcatac |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4359047 |
gagaaaagaatgtgaaagtttcatgtgacacggtaatctcgcaaaacagcaacaaatctaattgaaaaaaacaatatttttagtacctaaaatatcatac |
4359146 |
T |
|
| Q |
111 |
ccattacacttttaaccctataaaatacttgttcgtttttaaacgaggagggatcaagtcactccaatagtaacttagcttaatagtaattcg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4359147 |
ccattacacttttaaccctataaaatacttgttcgtttttaaacgaggagggatcaagtcactccaatagtaacttagcttaatagtaattcg |
4359239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University