View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_15 (Length: 556)
Name: NF19927_low_15
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 405 - 538
Target Start/End: Original strand, 9801220 - 9801353
Alignment:
| Q |
405 |
aataagaaacttatatgattgctcaacttcacgtgtttaccgacaaaaattgaaagcttgactactcttaagaaaacatgtattaatcggtgagtttcac |
504 |
Q |
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| T |
9801220 |
aataagaaacttatatgattgctcaacttcacgtgtttaccgacaaaaattgaaagcttgactactcttaagaaaacatgtattaatcggtgagtttcat |
9801319 |
T |
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| Q |
505 |
gatatggccttctccaaacaaaaacacactgcaa |
538 |
Q |
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| T |
9801320 |
gatatggccttctccaaacaaaaacacactgcaa |
9801353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9801088 - 9801163
Alignment:
| Q |
1 |
ttcgtttattttcatatagggcagtagtgcacgttgcacgaagcttaatggaaaatatgtgtataatcattgctaa |
76 |
Q |
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| T |
9801088 |
ttcgtttattttcatatagggcagtagtgcacattgcacaaagcttaatggaaaatatgtgtatatacattgctaa |
9801163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 435
Target Start/End: Original strand, 9823906 - 9824027
Alignment:
| Q |
315 |
attttagcacactttagagtctacataaaccaaatgtcaaggtataataaaaggaaaatgttgtttgacacgaaaagaaactttgagaaaaataagaaac |
414 |
Q |
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| T |
9823906 |
attttaacccactttatagtctacatataccacaaaaccaagtaaaataaaaggaaagtgttgtttgacacgaatagcaacttcttgaaaaataacaaac |
9824005 |
T |
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| Q |
415 |
ttatatg-attgctcaacttca |
435 |
Q |
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| T |
9824006 |
ttatatgaattgctcaacttca |
9824027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 9828202 - 9828277
Alignment:
| Q |
360 |
aataaaaggaaaatgttgtttgacacgaaaagaaactttgagaaaaataagaaacttatatgattgctcaacttca |
435 |
Q |
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| T |
9828202 |
aataaaaggaaaatgttgttcgacgcaaatagcaacttcacgaaaaataacaaacttatatgattgctcaacttca |
9828277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 433
Target Start/End: Original strand, 9707131 - 9707253
Alignment:
| Q |
311 |
aaatattttagcacactttagagtctacataaaccaaatgtcaaggtataataaaaggaaaatgttgtttgacacgaaaagaaactttgagaaaaataag |
410 |
Q |
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| T |
9707131 |
aaatattttagcatatgttatagtcaacatacaccacatgaccaagtaatataaaaggaaattgtagtttgtcatgaaatgaaacttcgagaaaaactac |
9707230 |
T |
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| Q |
411 |
aaacttatatgattgctcaactt |
433 |
Q |
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| T |
9707231 |
aaacttatatggttgctcaactt |
9707253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 9827576 - 9827624
Alignment:
| Q |
41 |
aagcttaatggaaaatatgtgtataatcattgctaaagtaaaatattaa |
89 |
Q |
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| T |
9827576 |
aagcttaatgccaaatatgtgtatatttattgctgaagtaaaatattaa |
9827624 |
T |
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