View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_150 (Length: 208)
Name: NF19927_low_150
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_150 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 25306530 - 25306683
Alignment:
| Q |
11 |
tcgaagaatatgtgatttgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacatcgtgaag |
110 |
Q |
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| T |
25306530 |
tcgaaaaagatgtgatttgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacaccgtgaag |
25306629 |
T |
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| Q |
111 |
taaaagatgagaatttgcatctatcaattatcttgataaaaggaaaatccaagg |
164 |
Q |
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| T |
25306630 |
taaaagatgagaatttgcatctataaattatcttgataaaaggaaaatccaagg |
25306683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 25277867 - 25277996
Alignment:
| Q |
28 |
tgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacatcgtgaagt-aaaagatgagaattt |
126 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
25277867 |
tgttgtgatgtggattatagattttttaacaaaatatagtacccgtagagaacatatggatgctaaatgtgaacaacgtgaagtaaaaagatgagaattt |
25277966 |
T |
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| Q |
127 |
gcatc--tatcaattatcttgataaaagga |
154 |
Q |
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| T |
25277967 |
gcatctatataaattatcttgataaaagga |
25277996 |
T |
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