View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_16 (Length: 550)
Name: NF19927_low_16
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 176 - 534
Target Start/End: Complemental strand, 96407 - 96048
Alignment:
| Q |
176 |
tatggatggaatagggaattattacatacatagttatcaataagtttctgaagtttgaactggatttttccaagcataagaagaacctttcctgcagaaa |
275 |
Q |
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| T |
96407 |
tatggatggaatagggaattattacatacatagttatcaataagtttctgaagtttgaactggatttttccaagcataagaagaacctttcctgcagaaa |
96308 |
T |
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| Q |
276 |
cagaataagtagttaagtaaagttagaaagaggttagtgaagcaacaagaagtggtacctaccagtttcttcttcgtgatcattcaaagcagttttctcg |
375 |
Q |
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| T |
96307 |
cagaataagtagttaagtaaagttagaaagaggttagtgaagcaacaagaagtggtacctaccagtttcttcttcgtgatcattcaaagcagttttctcg |
96208 |
T |
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| Q |
376 |
agtaaacaagaacccatgtcccgcaacgactcagcgaattctgtataattactacatgatcattacataattcacatagttgcggtaatcatttctaaat |
475 |
Q |
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| T |
96207 |
agtaaacaagaacccatgtcccgcaacgactcagcgaattctgtataattactacatgatcattacataattcacatagttgcggtaatcatttctaaat |
96108 |
T |
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| Q |
476 |
gaataga-aaaataccataagcactactggcggttgcggccgctgcggaaagtaaggtat |
534 |
Q |
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| T |
96107 |
gaatagaaaaaataccataagcactactggcggttgcggccgctgcggaaagtaaggtat |
96048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 96570 - 96465
Alignment:
| Q |
11 |
caaaggcaggttaaaaaactgacctcaacaattcgaagttcattcaagagtgactcagatggaactgtaattgtctgtattatatgggaacgctgaaata |
110 |
Q |
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| T |
96570 |
caaaggcaggttaaaaaactgacctcaacaattcgaagttcattcaagagtgactcagatggaactgtaattgtctgtattatatgggaacgctgaaata |
96471 |
T |
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| Q |
111 |
acgtag |
116 |
Q |
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| T |
96470 |
acgtag |
96465 |
T |
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