View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_18 (Length: 531)
Name: NF19927_low_18
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Original strand, 21386775 - 21387291
Alignment:
| Q |
16 |
caaattcctcataacttatttttccatcctacagtttaatgaagaaaaagatcaacgagtcgttccaaatattgacaaattaaatatctacatacaagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386775 |
caaattcctcataacttatttttccatcctacagtttaatgaagaaaaagatcaacgagtcgttccaaatattgacaaattaaatatctacatacaagaa |
21386874 |
T |
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| Q |
116 |
tttttgttttaaaattataatactgatcaggaataattcagaaagatccatcaagggattgtccacaaaaca---gcagaaaggaactatatctaggtgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21386875 |
tttttgttttaaaattataatactgatcaggaataattcagaaagatccatcaagggattgtccacaaaacaacagcagaaaggaactatatctaggtgt |
21386974 |
T |
|
| Q |
213 |
ttcaaagatgcagatttttcccaagtgggcaataaagcataaacaaacattaattgaaaattttgacaacacgagaaaaatatactgaccttatctgtgt |
312 |
Q |
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| T |
21386975 |
ttcggagatgcagattgttcccaagtgggcaataaagcataaacaaacattaattgaaaattttgacaacacgagaaaaatatactgaccttatctgtgt |
21387074 |
T |
|
| Q |
313 |
ccacatcatgcataattgcattaatgacttcttcactgtttgtgtcaacctcatcagctaaggcactacgtaactcctcaagttcaataaacccagattc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21387075 |
ccacatcatgcataattgcattaatgacttcttcactgttcgtgtcaacctcatcagctaaggcattacgtaactcctcaagttcaataaacccagattc |
21387174 |
T |
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| Q |
413 |
gtttttatcaaaaaattggaatgctctttggaggtgttcatcatgggatatctttctcagatgaatagaaatagctacaaactctccataatctaggaaa |
512 |
Q |
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| T |
21387175 |
gtttttatcaaaaaattggaatgctctttggaggtgttcatcatgggatatctttctcagatgaatagaaatggctacaaactctccataatctaggaaa |
21387274 |
T |
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| Q |
513 |
ccatattcttcgacatc |
529 |
Q |
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|||| || |||||||| |
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| T |
21387275 |
ccatctttgtcgacatc |
21387291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 300 - 509
Target Start/End: Original strand, 36381788 - 36381997
Alignment:
| Q |
300 |
accttatctgtgtccacatcatgcataattgcattaatgacttcttcactgtttgtgtcaacctcatcagctaaggcactacgtaactcctcaagttcaa |
399 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || | ||||| | ||||||| | || |||||||||| |||| |
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| T |
36381788 |
accttatctgtgtccacatcatgcataattgcactaatgacttcttcactatttgtttcgatttcatcggataaggcattgcgcaactcctcaatctcaa |
36381887 |
T |
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| Q |
400 |
taaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgttcatcatgggatatctttctcagatgaatagaaatagctacaaactctcc |
499 |
Q |
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| T |
36381888 |
tatacccagtttggttttgatcaaaaaaatcaaaggctttgtgaaggtgctcatcatttcccatctttctcagatgaacagaaatggctacatactcccc |
36381987 |
T |
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| Q |
500 |
ataatctagg |
509 |
Q |
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|||||||||| |
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| T |
36381988 |
ataatctagg |
36381997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 4286254 - 4286192
Alignment:
| Q |
387 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
449 |
Q |
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||||||||||||||| ||| ||||| |||||||||||||| | ||||||||| ||||||||| |
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| T |
4286254 |
tcctcaagttcaatataccgagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
4286192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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