View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_19 (Length: 508)
Name: NF19927_low_19
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_19 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: scaffold0618 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Original strand, 6895 - 7377
Alignment:
| Q |
16 |
gttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaacagatccgaatgaaaaca |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6895 |
gttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaacagatccaaatgaaaaca |
6994 |
T |
|
| Q |
116 |
caggaattataatacataactgccgtataaccgctgcaaatgatttgaaagcggttcagaattcagttaaaacatatcttggtagaccatggcagaaata |
215 |
Q |
| |
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| |||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6995 |
ctggaattgtaatacataactgccgtataaccgcatcaagtgatttgaaagcgattcagaattcagttaaaacatatcttggtagaccatggcagaaata |
7094 |
T |
|
| Q |
216 |
ttcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095 |
ttcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattat |
7194 |
T |
|
| Q |
316 |
ggcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaatttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7195 |
ggcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaatttt |
7294 |
T |
|
| Q |
416 |
ctgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcat |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7295 |
ctgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcat |
7377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Original strand, 44087594 - 44088073
Alignment:
| Q |
16 |
gttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaacagatccgaatgaaaaca |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44087594 |
gttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaacagatccaaatgaaaaca |
44087693 |
T |
|
| Q |
116 |
caggaattataatacataactgccgtataaccgctgcaaatgatttgaaagcggttcagaattcagttaaaacatatcttggtagaccatggcagaaata |
215 |
Q |
| |
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| |||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44087694 |
ctggaattgtaatacataactgccgtataaccgcatcaagtgatttgaaagcgattcagaattcagttaaaacatatcttggtagaccatggcagaaata |
44087793 |
T |
|
| Q |
216 |
ttcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44087794 |
ttcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattat |
44087893 |
T |
|
| Q |
316 |
ggcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaatttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44087894 |
ggcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaatttt |
44087993 |
T |
|
| Q |
416 |
ctgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
495 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44087994 |
ctgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
44088073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Complemental strand, 44093016 - 44092534
Alignment:
| Q |
16 |
gttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaacagatccgaatgaaaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44093016 |
gttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaaaagaacaccgtaacagcacaaggaagaacagatccaaatgaaaaca |
44092917 |
T |
|
| Q |
116 |
caggaattataatacataactgccgtataaccgctgcaaatgatttgaaagcggttcagaattcagttaaaacatatcttggtagaccatggcagaaata |
215 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44092916 |
ctggaattgtaatacataactgccgtataaccgcatcaagtgatttgaaagcgattcagaattcagttaaaacatatcttggtagaccatggcagaaata |
44092817 |
T |
|
| Q |
216 |
ttcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44092816 |
ttcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattat |
44092717 |
T |
|
| Q |
316 |
ggcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaatttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44092716 |
ggcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaatttt |
44092617 |
T |
|
| Q |
416 |
ctgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcat |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44092616 |
ctgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcat |
44092534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 72 - 495
Target Start/End: Complemental strand, 44067459 - 44067036
Alignment:
| Q |
72 |
gaacaccgtaacagcacaaggaagaacagatccgaatgaaaacacaggaattataatacataactgccgtataaccgctgcaaatgatttgaaagcggtt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44067459 |
gaacaccgtaacagcacaaggaagaacagatccgaatgaaaacacaggaattataatacataactgccgtataaccactgcaaatgatttgaaagcggtt |
44067360 |
T |
|
| Q |
172 |
cagaattcagttaaaacatatcttggtagaccatggcagaaatattcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggtt |
271 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44067359 |
cagaattcggttaaaacatatcttggtagaccatggcagaaacattcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggtt |
44067260 |
T |
|
| Q |
272 |
gggctccatggatgggtggttttgctttgagtacactttattatggcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcc |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44067259 |
gggctccatggatgggtggttttgctttgagtacactttattatggcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcc |
44067160 |
T |
|
| Q |
372 |
tggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44067159 |
tggttttcatgttattactaatccttcagatgcagttaaattttctgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgttt |
44067060 |
T |
|
| Q |
472 |
gatgcaggtttgtgaatattgatt |
495 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
44067059 |
gatgcaggtttgtgaatattgatt |
44067036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 44067710 - 44067647
Alignment:
| Q |
16 |
gttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccg |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
44067710 |
gttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaatagaacaccg |
44067647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 8767261 - 8767322
Alignment:
| Q |
193 |
cttggtagaccatggcagaaatattcaagaacggttgttatgaaaagtaatcttgatggttt |
254 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| | ||||||| | |||||||||||| |
|
|
| T |
8767261 |
cttggtagaccgtggcaaaaatattcaagaacggttttcatgaaaactgttcttgatggttt |
8767322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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