View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_2 (Length: 758)
Name: NF19927_low_2
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 13870501 - 13870096
Alignment:
| Q |
20 |
aggactctgttgtttttgagtgtgtatgtgttcagaggtgtcaggaaggaggaagttgaggttaccgtggatgacaacactctcgccgttaaggatgctc |
119 |
Q |
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| T |
13870501 |
aggactctgttgtttttgagtgtgtatgtgttcagaggtgtcaggaaggaggaagttgaggttactgtggatgacaacactctcaccgttaaggatgctc |
13870402 |
T |
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| Q |
120 |
ttcctggccggaatcagttcaatgcaacaattaacttaactgggaagtaggctattggtctttggtttgacgaagaaaactctttgtgtgggaaaccatt |
219 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13870401 |
ttcctggccggaatcagttcaatggaacaatcaacttaactgggaagtaggctatttgtctttggtttgacgaagaaaactct--gtgtgggaaaccatt |
13870304 |
T |
|
| Q |
220 |
ttgtgcaatagtcttttggaggtaattaggaattggagaagagtgggaggagaggataggtggtggtggaagtcggaggagacaggtagttttatggtga |
319 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13870303 |
ttgtgcaatagtcttttggaggtaattgggaattggagaagagtgggaggagaggataggtggtggtggaagtcggaggagacaggtagttttatggtga |
13870204 |
T |
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| Q |
320 |
gttcaacctacaagatcttggagaatttgttgataccgagagaggaattgtgtggtaccaaagaaagggtgtttgggtccgtttggaaaagcctggctcc |
419 |
Q |
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| T |
13870203 |
gttcaacctacaagatcttggagaatttgttgataccgagagaggaattgtgtggtaccaaagaaagggtgtttgggtccgtgtggaaaagcctggcttc |
13870104 |
T |
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| Q |
420 |
tacaaagg |
427 |
Q |
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|||||||| |
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| T |
13870103 |
tacaaagg |
13870096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 424 - 566
Target Start/End: Complemental strand, 13870037 - 13869898
Alignment:
| Q |
424 |
aaggaggagagttt-gcctttagatgactcagtgaattgtgttttctgcaatctgagggctgaaatctcctcacatattttccttcattgtcagtttgcc |
522 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13870037 |
aaggaggagagttttgcctttagatgactcagtgaattgtgttttctgcaatctgagggctgaaatctcctcacatattttccttcattgtcagtttgcc |
13869938 |
T |
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| Q |
523 |
ttcaaggtatggtctaattaaggtgcttggttggttacatatta |
566 |
Q |
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| T |
13869937 |
ttcaaggtatggtc----taaggtgcttggttggttacatatta |
13869898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 573 - 742
Target Start/End: Complemental strand, 13872242 - 13872074
Alignment:
| Q |
573 |
ttaattgtgttgttatgggaagtgatcactacacttgttgaagttcttggtaattgtcattctgttgtcgtaagttgtcggcttatcaaatcatagcatt |
672 |
Q |
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| T |
13872242 |
ttaattgtgtt--tataggaagtgatcactacacttgttgaagttcttggtaattgtcattctgttgccgtaacttgtcggattgtcaaatcatagtatt |
13872145 |
T |
|
| Q |
673 |
gataacatcatttcatttttaactgttttatgg-attatcaagttatcccctcacttgttaagttccttgt |
742 |
Q |
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|||| ||| |||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||| |||| |
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| T |
13872144 |
gatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgt |
13872074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 573 - 706
Target Start/End: Complemental strand, 13884534 - 13884405
Alignment:
| Q |
573 |
ttaattgtgttgttatgggaagtgatcactacacttgttgaagttcttggtaattgtcattctgttgtcgtaagttgtcggcttatcaaatcatagcatt |
672 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | || ||||||| ||| || |
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| T |
13884534 |
ttaattgtgtt--tatgggaagtgatcactacacttgttgaagttcttggtaattgtcattctggtgccgtaagttgttagtttgtcaaatcttagtttt |
13884437 |
T |
|
| Q |
673 |
gataacatcatttcatttttaactgttttatgga |
706 |
Q |
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|||| ||| ||||| ||||||||||||||||| |
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| T |
13884436 |
gatagcataatttc--ctttaactgttttatgga |
13884405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 652 - 742
Target Start/End: Complemental strand, 13874495 - 13874404
Alignment:
| Q |
652 |
ggcttatcaaatcatagcattgataacatcatttcatttttaactgtttta-tggattatcaagttatcccctcacttgttaagttccttgt |
742 |
Q |
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||||| |||||||||||||||||||||||||||| ||||| || |||||| ||| |||||||| ||||||||||||||||||||| |||| |
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| T |
13874495 |
ggcttgtcaaatcatagcattgataacatcatttaattttcaatggttttacgggactatcaagtgatcccctcacttgttaagttctttgt |
13874404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 573 - 634
Target Start/End: Original strand, 12957664 - 12957723
Alignment:
| Q |
573 |
ttaattgtgttgttatgggaagtgatcactacacttgttgaagttcttggtaattgtcattc |
634 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
12957664 |
ttaattgtgtt--tatgggaagtgattactacactttttgaagttcttggtaattgtcattc |
12957723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 743
Target Start/End: Original strand, 14392504 - 14392654
Alignment:
| Q |
592 |
aagtgatcactacacttgttgaagttcttggtaattgtcattctgttgtcgtaagttgtcggcttatcaaatcatagcattgataacatcatttcatttt |
691 |
Q |
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|||||||||| ||| |||| ||||||||| ||||| |||||| | ||| |||| ||| | ||| |||||| | |||||||| ||||||| |||||||| |
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| T |
14392504 |
aagtgatcaccacatttgt-gaagttctttgtaatcgtcattttattgcaataagctgttgacttctcaaataaaagcattgacaacatcagttcatttt |
14392602 |
T |
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| Q |
692 |
taactgttttatgg-attatcaagttatcccctcacttgttaagttccttgtt |
743 |
Q |
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| | ||||||||| | |||||||| |||||||||||||| |||||| ||||| |
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| T |
14392603 |
-agcagttttatgggactatcaagtgatcccctcacttgtaaagttcattgtt |
14392654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 742
Target Start/End: Complemental strand, 13882613 - 13882546
Alignment:
| Q |
676 |
aacatcatttcatttttaactgttttatgg-attatcaagttatcccctcacttgttaagttccttgt |
742 |
Q |
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|||||||||||||||||||||||||||||| | ||| || |||| |||||||||||||||| |||| |
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| T |
13882613 |
aacatcatttcatttttaactgttttatgggactatactgtgatcctctcacttgttaagttctttgt |
13882546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 705
Target Start/End: Complemental strand, 16025180 - 16025119
Alignment:
| Q |
644 |
aagttgtcggcttatcaaatcatagcattgataacatcatttcatttttaactgttttatgg |
705 |
Q |
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||||||| ||||| ||||||| | | |||||| || ||||||||||||||||||||||||| |
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| T |
16025180 |
aagttgttggcttggcaaatcagaaccttgatagcaccatttcatttttaactgttttatgg |
16025119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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