View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_22 (Length: 480)
Name: NF19927_low_22
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 10197275 - 10196805
Alignment:
| Q |
1 |
agcaaaaatggtgatgattttctttgactctaagaagcatgatattcaatggtttagaataggcatagcactagagtttctgtagttaatgtataggtgc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10197275 |
agcaaaaatggtaatgattttctttgactctaagaagcatgatattcaatggtttagaataggcatagcactagagtttctgtagttaatgtataggtgc |
10197176 |
T |
|
| Q |
101 |
aacttaattgcaaaaatattttgcatcgaagatgtgaatattcatgcaattgttagtgnnnnnnnnnnnnnnnnnnn-aaattcttattgaaattacgag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
10197175 |
aacttaattgcaaaaatattttgcatcgaagatgtgaatattcatgcatttgttagtgttttttgttttcttttttttaaattcttattgaaattacgag |
10197076 |
T |
|
| Q |
200 |
tatttattatgaagtttttaaataaatcaagtacatccatccttaatccagtttctatatctaatctgcaggttgctacttttctacatcaccaagagaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10197075 |
tatttattatgaagtttttaaataaatcaagtacatccatccttaatccagtttctatatctaatctgcaggttgctacttttctacatcaccaagagaa |
10196976 |
T |
|
| Q |
300 |
aatgaatgttattgtggaacctgatgtgcatgatgtacttgctagaattccaggttttggttttgtgcagaccttttatagccatgatacaaggtacttt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10196975 |
aatgaatgttattgtggaacctgatgtgcatgatgtacttgctagaattccaggttttggatttgtgcagaccttttatagccatgatacaaggtacttt |
10196876 |
T |
|
| Q |
400 |
agtttgaaataataactttgttgaactcacttcaattctacgcactttgtttacttaaagctactcctttg |
470 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10196875 |
agtttgaaataataacattgttgaactcacttcaattctacgcactttgtttacttaaagctactcctttg |
10196805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 359
Target Start/End: Complemental strand, 40301662 - 40301552
Alignment:
| Q |
249 |
agtttctatatctaatctgcaggttgctacttttctacatcaccaagagaaaatgaatgttattgtggaacctgatgtgcatgatgtacttgctagaatt |
348 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||||||| || |||||||||||||||| || | ||||||||||||||||||||| || ||||||||||| |
|
|
| T |
40301662 |
agtttctttatctaatcctcaggttgcttcttttctatataaccaagagaaaatgaacgtattcgtggaacctgatgtgcatgatatatttgctagaatt |
40301563 |
T |
|
| Q |
349 |
ccaggttttgg |
359 |
Q |
| |
|
|| || ||||| |
|
|
| T |
40301562 |
cccggatttgg |
40301552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University