View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_23 (Length: 476)
Name: NF19927_low_23
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 193 - 460
Target Start/End: Original strand, 52872303 - 52872551
Alignment:
| Q |
193 |
tactttaattattttactcctggaagatgatacttttagattattattttgtctcnnnnnnnttgtaacatgaaaaaagttattgtactctattctttca |
292 |
Q |
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| T |
52872303 |
tactttaattattttactcctggaagat-atacttttagattattattttgtctcaaaaaaattgtaacatgaaaaaagttattgtactctattctttca |
52872401 |
T |
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| Q |
293 |
ataaaattttaattaccaataaaattgcacaaatgattggaaatttattttactcaannnnnnnaattagtaaaatttaaattacccgtgcatctcaagg |
392 |
Q |
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| T |
52872402 |
ataaaat------------------tgcacaaatgattggaaatttattttactcaatttttttaattagtaaaatttaaatcacccgtgcatctcaagg |
52872483 |
T |
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| Q |
393 |
tctatggtctcgtagaaatagaatagaatccaataatgaacgtgaggttgtatgttggagccacaaat |
460 |
Q |
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| T |
52872484 |
tccatggtctcgtagaaatagaatagaattcaataatgaacgtgaggttgtatgttggagccacaaat |
52872551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 52872123 - 52872223
Alignment:
| Q |
63 |
ttttgaacgatgccaacaattaatatagcatttttactgataaatttatttaatggtataatcgaaagtgataaagtcggttcaaaacacgtgttccttt |
162 |
Q |
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| T |
52872123 |
ttttgaacgatgccaacaat----atagcatttttacggataaatttatttaatgatataatcgaaagtgataaagtcagtttaaaacatatgttccttt |
52872218 |
T |
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| Q |
163 |
tatat |
167 |
Q |
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||||| |
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| T |
52872219 |
tatat |
52872223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 42825189 - 42825157
Alignment:
| Q |
101 |
gataaatttatttaatggtataatcgaaagtga |
133 |
Q |
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| T |
42825189 |
gataaatttatttaatggtataaccgaaagtga |
42825157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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