View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_24 (Length: 471)
Name: NF19927_low_24
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 462
Target Start/End: Complemental strand, 6100212 - 6099765
Alignment:
| Q |
15 |
aaaactatcagcagtaggcttcttgagcaaatccatgggtagctctatcataataatcatatgaaccacatgctgattcatatgtgctacagacttaaca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100212 |
aaaactatcagcagtaggcttcttgagcaaatccatgggtagctctatcacaataatcatatgaaccacatgctgattcatatgtgctacagacttaaca |
6100113 |
T |
|
| Q |
115 |
gtagcaagtaattgaggctgcaactaacaagaagaaaaccaattagaagcaaatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100112 |
gtagcaagtaattgaggctgcaactaacaagaagaaaaccaattagaagcaaatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcag |
6100013 |
T |
|
| Q |
215 |
caaaggaaattacatcagggtgcctaattacaaacacatactttgtcattatgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100012 |
caaaggaaattacatcagggtgcctaattacaaacacatactttgtcattatgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaa |
6099913 |
T |
|
| Q |
315 |
ctttagtaaatttcatgtcacacattagtaaaccaaggatatggaatttgtaagttcatacacagtcttcaaaatagttgtgtccaaggatcaagttctc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
6099912 |
ctttagtaaatttcatgtcacacattagtaaaccaaggatatggaatttgtaagttcatacacagtctgcaaaatagttgtctccaaggatcaagttctc |
6099813 |
T |
|
| Q |
415 |
gacgaataactcatgaattatacttgtaacattcatcgcatggacctt |
462 |
Q |
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| T |
6099812 |
gacgaataactcatgaattatacttgtaacattcatcgcatggacctt |
6099765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 80 - 462
Target Start/End: Original strand, 28055403 - 28055789
Alignment:
| Q |
80 |
ccacatgctgattcatatgtgctacagacttaacagtagcaagtaattgaggctgcaactaacaagaagaaaaccaattagaagcaaatgaaaaggcaaa |
179 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28055403 |
ccacatgctgattcatatgtgctacacactta---gtagcaagtaattgaggctgcaactaacaataagaaaaccaattagaagcaaatgaaaaggcaaa |
28055499 |
T |
|
| Q |
180 |
taagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaattacaaacacatactttgtcattatgttttcatgctct |
279 |
Q |
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||||| || |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||| |||||||||| | |||| ||||||| |
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| T |
28055500 |
taaga-taaaattgggatggtaacaacgatctcagcaaaggaaattacatcagggtgctcaattacaaacgcatgctttgtcattctatttttatgctct |
28055598 |
T |
|
| Q |
280 |
tttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgt-------cacacattagtaaaccaaggatatggaatttgtaagttca |
372 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||| |||| | ||| || ||||||||| |
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| T |
28055599 |
tttaaactacaaaacaatcattcaaagcattccacctttagtaaattccgagttgacaacaacacattagtaaacctaggaaaaggagttcgtaagttca |
28055698 |
T |
|
| Q |
373 |
tacacagtcttcaaaatagttgt-gtccaaggatcaagttctcgacgaataactcatgaattatacttgtaacattcatcgcatggacctt |
462 |
Q |
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|||| |||| |||||||||||| |||||||||||||||| |||| ||||||||| |||| | |||||||| |||||||||||||||||| |
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| T |
28055699 |
tacatggtctgcaaaatagttgtattccaaggatcaagttcccgacaaataactcaggaatgacacttgtaatattcatcgcatggacctt |
28055789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 17963164 - 17963201
Alignment:
| Q |
96 |
atgtgctacagacttaacagtagcaagtaattgaggct |
133 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| |
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| T |
17963164 |
atgtgctacaaacttaacagcagcaagtaattgaggct |
17963201 |
T |
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Back To:
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