View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_25 (Length: 468)
Name: NF19927_low_25
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 456
Target Start/End: Complemental strand, 7497647 - 7497219
Alignment:
| Q |
12 |
ttcgaattcatgagaagatgtctagcctaaaaatagtgatcttaaactttaaggacaagtccttataagaacatgaattcgaactcaagtgaacatgagt |
111 |
Q |
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| T |
7497647 |
ttcgaactcaggtgaaggtgtctagcctcaaaatagtgatcttagactttaaggactggtccttataagatcctgaattcgaactcatgtgaacatgagt |
7497548 |
T |
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| Q |
112 |
aggtgtctagcctaagaatagtgatcttaggcttttaaggactagtccttaataatatctcactacactatatatgctgaaatatttaacaagtgaagaa |
211 |
Q |
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| T |
7497547 |
aggtgtctagcctaagaatagtgatctcaggcttt-aaggactagtccttaataatatctcactacactatatatgctc--------------tgaa-aa |
7497464 |
T |
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| Q |
212 |
ataacaaagtattatactcaactttcttagttaaaataattttataaattccaatgatacctgtatgaacataaaagaccatagctgcatgtagaagcac |
311 |
Q |
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| T |
7497463 |
ataacaaagtattatactaaacttccttagttaaaataattttataaattccaatgatacctgtatgaacataaaagagcatagctgcatgtagaagcac |
7497364 |
T |
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| Q |
312 |
aggaagaaacacagagttaggttccaatgtaaagaactctatatgatagtgttgtgcgttatgtccatctttgacatcagtggcagagatctctccatat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7497363 |
aggaagaaacacagagttaggttccaatgtaaagaactcaatatgatagtgttgtgtgttatgtccatctttgacatcagtggcagagatctctccatat |
7497264 |
T |
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| Q |
412 |
tcagtctcaaacaatgtcttcctttgacccctttccaccacaggt |
456 |
Q |
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| T |
7497263 |
tcagtctcaaacaatgtcttcctttgacccctttccaccacaggt |
7497219 |
T |
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