View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_26 (Length: 467)
Name: NF19927_low_26
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 158 - 458
Target Start/End: Complemental strand, 22325469 - 22325169
Alignment:
| Q |
158 |
ctgtaagtacacatatttatattgtttcaactgatggagacataacataactta-ttacatactgagttgttatttactattttcgttttaaaattttga |
256 |
Q |
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| T |
22325469 |
ctgtaagtacacatatttatattgtttcaactgatggagacataacataacttagttacatactgagttgttatttactattttcgttt-aaaattttga |
22325371 |
T |
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| Q |
257 |
atgaagaatggagaatctttccgcgctaaaggatttaagcgatataaattttcatccgatggtccattgattcgaggagataaagacacaacaatctata |
356 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
22325370 |
atgaagaatggagaatctttccgcgctaatggatttaagcgatataaattatcatccgatgatccattgattcgaggagataaagacacaaaaatctata |
22325271 |
T |
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| Q |
357 |
ttgatgcatctaaacaaactattatggcccataagtttgctcttggttcaaagtcaagtgtttttaaccaaatgttcaaggaggattctgctgatagtat |
456 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
22325270 |
ttgatgcatctaaacaaactattatggcccataagtatgctcttggttcaaagtcaagtgcttttaaccaaatgttcaaggaggattctgttgatagtat |
22325171 |
T |
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| Q |
457 |
ta |
458 |
Q |
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|| |
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| T |
22325170 |
ta |
22325169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 22326049 - 22325916
Alignment:
| Q |
18 |
tcattgtatcccaattataaaattgtgggtggtttaaatccccccattgcatcttttcaaattagggttttgtacaatatcggaaaacaaagtcaaattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
22326049 |
tcattgtatcccaattataaaattgtgggtggtttaaatccccccattgcatcttttcaaattagggttttggacaatatcggaaaacaaagtcgaattc |
22325950 |
T |
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| Q |
118 |
tagccatgtcaggtgatttaattaattataaata |
151 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
22325949 |
tagccatgtcaggtgattaaattaattataaata |
22325916 |
T |
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