View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_28 (Length: 456)
Name: NF19927_low_28
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 3700851 - 3700435
Alignment:
| Q |
14 |
tatgttgatgctttctttgagttcaactctcaattaggctctaaatgctacaacaaagaaaaatataagaaactagggttctaagctaaaagaaagagaa |
113 |
Q |
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| T |
3700851 |
tatgtagatgctttctt-gagttcaactctcaattaggctctaaatgctacaacaaagaaaaatataagaaactagggttctaagctaaaagaaagagaa |
3700753 |
T |
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| Q |
114 |
taaagtaactacaaaatacaattagcttcattcaatttggttgatttgaaaagtgtctaaaaaatactgcatataaaggtgatagtggattataactcaa |
213 |
Q |
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| T |
3700752 |
taaagtaactacaaaatacaattagcttcattcattttggttgatttgaaaagtgtctcaaaaatactgcatataaagttgataatggattataactcaa |
3700653 |
T |
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| Q |
214 |
gtgtttgtccacaatttcagttgtagtagctttgtattcacagaataattaaatgaatactcaaaataaaagcttggggacctcaaatgctactcccaac |
313 |
Q |
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| T |
3700652 |
gtgtttgtccacaatttctgttgtagtagctttgaattcacagaataattaaatgaatactcaaaataaaaacttggggacctcaaatgctactcccaac |
3700553 |
T |
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| Q |
314 |
aagcaaatagttgcatctaaaggaatgaagtgattaaaatgaaaagctcttcagttacaatagaaattaagcatgccatcaaaaccatttagcatcattt |
413 |
Q |
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| T |
3700552 |
aagcaaatagttgcatctaaaggaatgaagtgattaaaatgaaaagctcttcagttacaatagaaattaagcatgtcatcaaaaccatttagcatcattt |
3700453 |
T |
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| Q |
414 |
gtatagactttagattac |
431 |
Q |
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| T |
3700452 |
gtatagactttagattac |
3700435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 3712692 - 3712616
Alignment:
| Q |
30 |
ttgagttcaactctcaattaggctctaaatgctacaacaaagaaaaatataagaaactagggttctaagctaaaagaa |
107 |
Q |
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| T |
3712692 |
ttgagttcaactctccattaggctctaaatgctacaacaatgaaaactgtaagaaacta-ggttctaggctaaaagaa |
3712616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 3714817 - 3714745
Alignment:
| Q |
204 |
tataactcaagtgtttgtccacaatttcagttgtagtagctttgtattcacagaataattaaatgaatactcaaaa |
279 |
Q |
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||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||| |||| |
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| T |
3714817 |
tataactcaagtgtttgtccataatttcagttgtacaagctatgtattc---gaataattaaatgaatacttaaaa |
3714745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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