View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_3 (Length: 750)
Name: NF19927_low_3
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 684; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 15 - 734
Target Start/End: Original strand, 21196832 - 21197551
Alignment:
| Q |
15 |
atgaagagtatatatcgaaaaggaatgaaataagtcaaaatggcagcaatcaaacagaaaattaggaacaaagccgttgctcttggatccctccagctga |
114 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21196832 |
atgaagagtatatatcgaaaaagaatgaaataagtcaaaatggcagcaatcaaacagaaaattaggaacaaagccattgctcttggatccctccagctga |
21196931 |
T |
|
| Q |
115 |
taagagactgcaccctctctccttgagttgccaaatcacccatcacagcaagcactctacctgaaatgcctctcaatctatcataccttttttgcagatt |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
21196932 |
taagagaatgcaccctctctccttgagttgccaaatcacccatcacaacaagcactctccctgaaatgcctctcaatctatcataccttttatgcagatt |
21197031 |
T |
|
| Q |
215 |
accaccactaaatttagttggaaaaggatcaaactcttcttcaagttcttcagtagtagctgtatcagcatgagacaatttaatatccatatgagaagga |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21197032 |
accaccgctaaatttagttggaaaaggatcaaactcttcttcaagttcttcagtagtagctgtatcagcatgagacaatttaatatccatatgagaagga |
21197131 |
T |
|
| Q |
315 |
tatcttggccttattcggtattgccaaatcccattaaggagtaagaaggtaaatgttagcggcaaaatagctcccggcttgtaattgaaaaagcaaaaga |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21197132 |
tatcttggccttattcggtattgccaaatcccattgaggagtaagaaggtaaatgttagcggcaaaatagctcccggcttgtaattgaaaaagcaaaaga |
21197231 |
T |
|
| Q |
415 |
ttgaataaccacctatcgttgtaactgaattcttccaactgtgaatctcctcaattagtttaacaattgaaacaaaaccgctgagaagacttgcgatcct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21197232 |
ttgaataaccacctatcgttgtaactgaattcttccaactgtgaatctcctcaattagtttaacaattgaaacaaaaccgctgagaagacttgcgatcct |
21197331 |
T |
|
| Q |
515 |
gtaaaactgagctctccctctcctcatgctccacacgtttgccctcatatctaacatgaactcaacaacctctttactcagaggtggttcggcccttctg |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21197332 |
gtaaaactgagctctccctctcctcatgctccacacgtttgacctcatatctaacatgaactcaacaacctctttactcagaggtggttcggcccttctg |
21197431 |
T |
|
| Q |
615 |
aacctcaatatggtgattgcagcggcttggtttcgcagactgtcgatctgaaacatcgacaatggacatatgtaatgcatttttgggagcagaggttgag |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21197432 |
aacctcaatatggtgattgcagcggcttggtttcgcagactgtcgatctgaaacatcgacaatggacatatgtaatgcatttttgggagcagaggttgag |
21197531 |
T |
|
| Q |
715 |
cataagtttgcaaaacattc |
734 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21197532 |
cataagtttgcaaaacattc |
21197551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 15 - 734
Target Start/End: Original strand, 27252676 - 27253393
Alignment:
| Q |
15 |
atgaagagtatatatcgaaaaggaatgaaataagtcaaaatggcagcaatcaaacagaaaattaggaacaaagccgttgctcttggatccctccagctga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27252676 |
atgaagagtatatatcgaaaaggaatgaaataagtcaaaatggcagcaatcaaacagaaaattaggaacaaagcctttgctcttggatccctccagctga |
27252775 |
T |
|
| Q |
115 |
taagagactgcaccctctctccttgagttgccaaatcacccatcacagcaagcactctacctgaaatgcctctcaatctatcataccttttttgcagatt |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
27252776 |
taagagattgcaccctctctccttgagttgccaaatcacccatcacaacaagcactctccctgaaatgcctctcaatctatcataccttttctgcagatt |
27252875 |
T |
|
| Q |
215 |
accaccactaaatttagttggaaaaggatcaaactcttcttcaagttcttcagtagtagctgtatcagcatgagacaatttaatatccatatgagaagga |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27252876 |
accaccgctaaatttagttggaaaaggatcaaactcttcttcaagttcttcagtagtagctgtatcagcatgagacaatttaatatccat--gagaagga |
27252973 |
T |
|
| Q |
315 |
tatcttggccttattcggtattgccaaatcccattaaggagtaagaaggtaaatgttagcggcaaaatagctcccggcttgtaattgaaaaagcaaaaga |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27252974 |
tatcttggccttattcggtattgccaaatcccattgaggagtaagaaggtaaatgttagcggcaaaatagctcccggcttgtaattgaaaaagcaaaaga |
27253073 |
T |
|
| Q |
415 |
ttgaataaccacctatcgttgtaactgaattcttccaactgtgaatctcctcaattagtttaacaattgaaacaaaaccgctgagaagacttgcgatcct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
27253074 |
ttgaataaccacctatcgttgtaactgaattcttccaactgtgaatttcctcaattagtttaacaattgaaacaaaacctctgagaagacttgtgatcct |
27253173 |
T |
|
| Q |
515 |
gtaaaactgagctctccctctcctcatgctccacacgtttgccctcatatctaacatgaactcaacaacctctttactcagaggtggttcggcccttctg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
27253174 |
gtaaaactgagctctccctctcctcatgctccacacatttgccctcatatctagcatgaactcaacaacctctttacttagaggcggttcggcccttctg |
27253273 |
T |
|
| Q |
615 |
aacctcaatatggtgattgcagcggcttggtttcgcagactgtcgatctgaaacatcgacaatggacatatgtaatgcatttttgggagcagaggttgag |
714 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27253274 |
aacctcaatatggtgattgcagcagcttggtttcgcagactgtcgatctgaaacatcgacaatggacatatgtagtgcatttttgggagcagaggttgag |
27253373 |
T |
|
| Q |
715 |
cataagtttgcaaaacattc |
734 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27253374 |
cataagtttgcaaaacattc |
27253393 |
T |
|
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