View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_30 (Length: 452)
Name: NF19927_low_30
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 52054760 - 52054328
Alignment:
| Q |
1 |
gaataaaccatcaaagtactatcaaataaatctccgagattatgaatatttccaaaagatcttcaactttattaaattgttaagttggtcatcaaattta |
100 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52054760 |
gaataaaccatcaaagtactatctaataaatcttcgagattatgaatatttccaaaagatcttcaactttattaaattgttaagttggtcatcaaattta |
52054661 |
T |
|
| Q |
101 |
ttcacttgctgtcaattagatctttttaaacgacttactatcaattgggtctatatcattaaccatctattgttaactttaatctcccatatcaatgatc |
200 |
Q |
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| T |
52054660 |
ttcacttactgtcaattagatctttttaaacgacttactatcaattgggtctatatcattaaccatctattgttaactttaatctcccatatcaatgatc |
52054561 |
T |
|
| Q |
201 |
catttaagagtgtcttaaaatgtcagagactgattcgaagggtttactcaaatnnnnnnnnctaattagtaacaagactaccaaaaggtccctttggcag |
300 |
Q |
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| T |
52054560 |
tatttaagagtgtcttaaaatgtcagagactgattcgaagggtttactcaaat-aaaaaaacaaattagtaacaagactaccaaaaggtccctttggcag |
52054462 |
T |
|
| Q |
301 |
gtgaagtcgcacatggtaccgataaaataggagccaataaaatgtataaaacaattcaatacaaagtttagagagttgataacatgattaaggatgttcc |
400 |
Q |
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| T |
52054461 |
gtgaagtcgcacatggtaccgataaaataggagccaataaaatgtataaaacaattcaatacaaagtttggagagttgataacatgattgaggatgttcc |
52054362 |
T |
|
| Q |
401 |
agtgccaactcaaaaattagtctcataatgattt |
434 |
Q |
| |
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| | ||||||||||||||||||||||| |||||| |
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| T |
52054361 |
actaccaactcaaaaattagtctcatagtgattt |
52054328 |
T |
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Back To:
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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 1764289 - 1764226
Alignment:
| Q |
37 |
agattatgaatatttccaaaagatcttcaactttattaaattgttaagttggtcatcaaattta |
100 |
Q |
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||||||||||| ||| ||||||||| | ||||||||||| | ||||||||||| ||||||||| |
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| T |
1764289 |
agattatgaatgttttaaaaagatctccgactttattaaactattaagttggtcttcaaattta |
1764226 |
T |
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