View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_31 (Length: 443)
Name: NF19927_low_31
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Original strand, 24237252 - 24237667
Alignment:
| Q |
12 |
atgaaaagtaaggatctaaaaatagggatattttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaatnnnnnnncatggtt |
111 |
Q |
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| T |
24237252 |
atgaaaagtaaggatctaaaaatagggatattttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaataaaaaaacatggtt |
24237351 |
T |
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| Q |
112 |
gttgctactagacagcgaaatggattttggaacttatcaaaggtactatttataatcccacaggtaccggaaccattaaaagaacacccaataatttatt |
211 |
Q |
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| T |
24237352 |
gttgctactagacagcgaaatgaattttggaacttatcaaaggtactatttataatcccacaggtaccggaaccattaaaagaacactcaataatttatt |
24237451 |
T |
|
| Q |
212 |
aggatatagtaagtatttgaaatacgctaacagaataccaatcggataatatttccaaatgagtagcttcaatttggtcgtc-aaaaatctcaaatacaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
24237452 |
aggatatagtaagtatttgaaatacgctaacagaataccaatcggataatatttccaaatgagtagctacaatttggtcgtcaaaaaatctcaaatacaa |
24237551 |
T |
|
| Q |
311 |
gtctaattagacaacttttagataagttttaccgacacgtaagtctcataaacttgtagacggcatagaccaattaggtctactgttttttaagaaggac |
410 |
Q |
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| T |
24237552 |
gtctaattagacaacttttagataagttttacagacacgtaagtctcataaacttgtagacggcatagaccaattaggtctactgttttttaagaaggac |
24237651 |
T |
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| Q |
411 |
caatttagatattaat |
426 |
Q |
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| T |
24237652 |
caatttagatattaat |
24237667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 275
Target Start/End: Complemental strand, 18338906 - 18338779
Alignment:
| Q |
150 |
aaaggtactatttataatcccacaggtaccggaaccattaaaagaacacccaataatttattagg--atatagtaagtatttgaaatacgctaacagaat |
247 |
Q |
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||||||||| || |||||||||| ||||| | ||||||||||||||| |||||||||||||| || | || |||||||||||||||| || | ||| |
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| T |
18338906 |
aaaggtactgttaataatcccacgggtactgaaaccattaaaagaacgcccaataatttattgggtactgtacgaagtatttgaaatacgggaaaaaaat |
18338807 |
T |
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| Q |
248 |
accaatcggataatatttccaaatgagt |
275 |
Q |
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|||| |||| |||||||||||| |||| |
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| T |
18338806 |
accattcgggcaatatttccaaaggagt |
18338779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 18339026 - 18338921
Alignment:
| Q |
42 |
ttttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaatnnnnnnncatggttgttgctactagacagcgaaatggattttgg |
141 |
Q |
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|||||||||| ||||||||||||| ||| |||| |||||| | ||| |||||||| | ||||||||||||| ||| ||||||||| |||||| |
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| T |
18339026 |
ttttcaataggtaatgttgctccaatacccaaccaaagagccacgacggtaccaatcaaaaag-acggttgttgctactggacggcgaaatgggttttgg |
18338928 |
T |
|
| Q |
142 |
aacttat |
148 |
Q |
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||||||| |
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|
| T |
18338927 |
aacttat |
18338921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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