View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_33 (Length: 440)
Name: NF19927_low_33
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 46158942 - 46158536
Alignment:
| Q |
19 |
tgttcaatcttgcttttgattattgtgtacacgtattcgttgatcactcttaggnnnnnnnnaagtactgcttccgatccaatgttcaggaacctctgaa |
118 |
Q |
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| T |
46158942 |
tgttcaatcttgcttttgattattgtgtacacgtattcgttgatcactcttaggttttttttaagtaccgcttccgatccaatgttcaggaacctctgaa |
46158843 |
T |
|
| Q |
119 |
ccttccagcgaaagttaacataccgaaacataatagtagcactagcttcatcaaaagcattggaaaattgtgtgccttctttagaggttccacacattgt |
218 |
Q |
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| T |
46158842 |
ccttccagagaaagttaacataccaaaacataatagtagcactagcttcattaaaagcattggaaaattgtgtgccttctttagaggttccacacattgt |
46158743 |
T |
|
| Q |
219 |
gtccagctctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggtcctgccaataagcaatgtatgttaattaatgcagttaa |
318 |
Q |
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| T |
46158742 |
gtccagctctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggtcctgccaataagcaatgtatgttaattaatatagttaa |
46158643 |
T |
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| Q |
319 |
aatttaaaagtagtcttatagttagggacggaagtagtattacaaagatcataagaattttctgtaattcaaactaaacaacattttaccttcagctcaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46158642 |
aatttaaaagtagtcttatagttagggacggaagtagtattacgaagatcataagaattttctgtaattcaaactaaacaacattttacctgcagctcaa |
46158543 |
T |
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| Q |
419 |
taatatt |
425 |
Q |
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| T |
46158542 |
taatatt |
46158536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 295
Target Start/End: Complemental strand, 46166016 - 46165743
Alignment:
| Q |
22 |
tcaatcttgcttttgattattgtgtacacgtattcgttgatcactcttaggnnnnnnnnaagtactgcttccgatccaatgttcaggaacctctgaacct |
121 |
Q |
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|||||||||||| |||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||| |
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| T |
46166016 |
tcaatcttgcttctgattactgtgtacacgtattcgtcgattactcttaggttttttttaagtactgcttccgatcccatgttcaggaaccgctgaacct |
46165917 |
T |
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| Q |
122 |
tccagcgaaagttaacataccgaaacataatagtagcactagcttcatcaaaagcattggaaaattgtgtgccttctttagaggttccacacattgtgtc |
221 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
46165916 |
tccagagaaagttaacataccgaaacataatagcagcactagcttcatcaaaagcattggaaaattgtgtgccttctctataggttccacacattgtgtc |
46165817 |
T |
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| Q |
222 |
cagctctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggtcctgccaataagcaa |
295 |
Q |
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| T |
46165816 |
caattctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggtcctgccaataagcaa |
46165743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 46165638 - 46165548
Alignment:
| Q |
335 |
tatagttagggacggaagtagtattacaaagatcataagaattttctgtaattcaaactaaacaacattttaccttcagctcaataatatt |
425 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||| || ||| ||||||||| ||||||||||||||| |
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| T |
46165638 |
tatagttagggacggaggtagtattacgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctgcagctcaataatatt |
46165548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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