View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_34 (Length: 438)
Name: NF19927_low_34
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_34 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 155 - 438
Target Start/End: Original strand, 3816644 - 3816928
Alignment:
| Q |
155 |
aaaaaatgttgaaagccaatacacgattttaatttataaatatatatctacctttgaaattgctggattaagtgaaggaaaaattgacagtatgtcacta |
254 |
Q |
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| T |
3816644 |
aaaaaatgtagaaagccaatacacgattttaatttataaatatatatctacctttgaaattgctggatcaagtgaaggaaaaattgacagtatgtcacta |
3816743 |
T |
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| Q |
255 |
tttaatttataaaggcaagctgaatcatcatcgatccactatcaacaatcgaaaaatatttatttatgatgataaactaaattaattaatactgtccaag |
354 |
Q |
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| T |
3816744 |
tttaatttataaaggcaagctgaatcatcatcgatccactatcaacaatcgcaaaatatttatttatgatgataaactaaattaattaatactgtccaag |
3816843 |
T |
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| Q |
355 |
acaaatacgtgtcgg-aaaaaaccaaatacgacacaaagcaaataattttctcaagttttatcgaacaaaataacaataaacaca |
438 |
Q |
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| T |
3816844 |
acaaatacgtgttggaaaaaaaccaaatacgacgcaaagcaaataattttctcaagttttatcgaacacaatcacaataaacaca |
3816928 |
T |
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Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 37 - 424
Target Start/End: Complemental strand, 31052684 - 31052301
Alignment:
| Q |
37 |
aataagataaaattttggcctaaatatatgttatattatatgctatgaaatatacttcagaatcacaccaaattgagatcaatcgaagcaacagataagg |
136 |
Q |
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| T |
31052684 |
aataagataaaattt-ggcctaaatatatgttatattatatgctatgaaatatacttcataatcacaccaaattgagattaatcgaagcaacagataaag |
31052586 |
T |
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| Q |
137 |
tagtacaaattccataacaa-aaaatgttgaaagccaatacacgattttaatttataaatatatatcta-cctttgaaattgctggattaagtgaaggaa |
234 |
Q |
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| T |
31052585 |
tagcacaaattccataacaaaaaaaagtagaaaaccaatacacgattttgatttataaatatatatatataccttgaaattgctggatcaagtgaaggaa |
31052486 |
T |
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| Q |
235 |
aaattgacagtatgtcactatttaatttataaaggcaagctgaatcatcatcgatccactatcaacaatcgaaaaatatttatttatgatgataaactaa |
334 |
Q |
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| T |
31052485 |
aaattgacagtat----atatgtta-ctataaaggcaagctgaatcatcatcaatccagtatcaacagtcgcaaaatatttatttatgatgataaactaa |
31052391 |
T |
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| Q |
335 |
attaattaatactgtccaagacaaatacgtgtcggaaaaaaccaaatacgacacaaagcaaataattttctcaagttttatcgaacaaaa |
424 |
Q |
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| T |
31052390 |
attaattaatactgtccaagacaaatacgtgccggcaaaaaccaaatacgacacaaagcaaataattttctcaatttttatcgaacaaaa |
31052301 |
T |
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