View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_35 (Length: 437)
Name: NF19927_low_35
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 42473814 - 42474221
Alignment:
| Q |
1 |
taaaggctaaaacaactatgttatggaaagcttggatataaacatgttgacaatgacacctgacatttcctctatcttaagtgtcggtgctactgcgtag |
100 |
Q |
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| T |
42473814 |
taaaggctaaaacaactatgttatggaaagcatggatataaacatgttgacaatgacacctgacatttcctctatctcaagtgtcggtgctactg----- |
42473908 |
T |
|
| Q |
101 |
attatgttagcataaagaagaaggccaaaacattttgttagggtaggtaagatttataaaatgcaccttcataaaaacagcatcagcctttggaatactg |
200 |
Q |
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| T |
42473909 |
------ttagcgtatagaagaaggccaaaacattgtgttagggtaggtaagatttataaaatgcaccttcataaaaacagcatcagcctttggaatactg |
42474002 |
T |
|
| Q |
201 |
acaaacatgtctccaccaacatgctcaactcctacacaaaacatcaatgtcaattctacatatattgtagtaagtaattttgttcaaatatgctgtaaaa |
300 |
Q |
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| T |
42474003 |
acaaacatgtctccaccaacatgctcaactcctacacaaaacatcaatgtcaattctacatatattgtagtaagtaattttgttcaaatatgctgtaaaa |
42474102 |
T |
|
| Q |
301 |
cctaatactaattgtttaagacaatgacatgtaaactaagcagcgcggttaaacataagaaaaaa--tacctggataagatggagcatcttcaatgacat |
398 |
Q |
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| T |
42474103 |
cctaatactaattgtttaagacaatgacatgtaaactaagcagcgcggttaaacataagaaaaaaagtacctggataagatggagcatcttcaatgacat |
42474202 |
T |
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| Q |
399 |
ggggtaaatcaaaattaat |
417 |
Q |
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| T |
42474203 |
ggggtaaatcaaaattaat |
42474221 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 43002185 - 43002112
Alignment:
| Q |
164 |
caccttcataaaaacagcatcagcctttggaatactgacaaacatgtctccaccaacatgctcaactcctacac |
237 |
Q |
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| T |
43002185 |
caccttcatgaaaatggcatcagcttttggaacactcacaaacatgtctccaccaacatgttccacacctacac |
43002112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 43001734 - 43001683
Alignment:
| Q |
367 |
acctggataagatggagcatcttcaatgacatggggtaaatcaaaattaatg |
418 |
Q |
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| T |
43001734 |
acctggataagatggagcttcattaatgacatggggcaagtcaaaattaatg |
43001683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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