View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_36 (Length: 436)
Name: NF19927_low_36
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 3948533 - 3948947
Alignment:
| Q |
16 |
gctacaatatctagccataagatgttgccataaactacaaagtctgccagacctacctcaatctcttgaaattatacttgtgaacaagaaaagggttgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3948533 |
gctacaatatctagccataagatgttgccataaactgcaaagtctgccagacctacctcaatctcttgaaattctacttgtgaacaagaaaagggttgtt |
3948632 |
T |
|
| Q |
116 |
cccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--gtgtttaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
3948633 |
cccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgcgaatattgtgtttaat |
3948732 |
T |
|
| Q |
214 |
ttgcaaataaacattctgaaatttgcataccaacatgtatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattgaatctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3948733 |
ttgcaaataaacattctgaaatttgcataccaacatttatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattgaatctt |
3948832 |
T |
|
| Q |
314 |
atcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggattttgtagtcatggatctatcttcttctacacc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3948833 |
atcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgtgtataagacaacaacggattttgtagtcatggatctatcttcttctacacc |
3948932 |
T |
|
| Q |
414 |
gcgttcccctttgct |
428 |
Q |
| |
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||||||||||||||| |
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| T |
3948933 |
gcgttcccctttgct |
3948947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 110 - 428
Target Start/End: Original strand, 3965642 - 3965962
Alignment:
| Q |
110 |
gttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaatagtg-- |
207 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||| | | |||||||| || |||||||||||||||||||||||||||||||| | |||| || |
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| T |
3965642 |
gttgttcccttcaattcctgaacaattcaaggagaacaggtatagggttgtattcgcgaattgcttgaaattggatgaacattctcttgcaaatattgcg |
3965741 |
T |
|
| Q |
208 |
tttaatttgcaaataaacattctgaaatttgcataccaacatgtatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattg |
307 |
Q |
| |
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|||||| ||||||||||| | |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||| || |
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| T |
3965742 |
tttaatgcgcaaataaacaatatgaaatttgcatgccaacatgtatcagctttggaacatgattttcataataagttcaatgattataaggatcacaatg |
3965841 |
T |
|
| Q |
308 |
aatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggattttgtagtcatggatctatcttcttc |
407 |
Q |
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| ||||||||||| ||||| ||||||||||| | ||| |||||| ||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||| |
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| T |
3965842 |
attcttatcaagcaatttacgtgtatccaggaaacagcgttccagagtggtttgagtatatgacaacaacggattatgtagtcattgatctatcttcttc |
3965941 |
T |
|
| Q |
408 |
tacaccgcgttcccctttgct |
428 |
Q |
| |
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|||| | ||||||||||||| |
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| T |
3965942 |
tacatcaagttcccctttgct |
3965962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 110 - 421
Target Start/End: Complemental strand, 4016671 - 4016361
Alignment:
| Q |
110 |
gttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--gtg |
207 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||| |||| ||| |
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| T |
4016671 |
gttgttcccttcaattgctgaacaattcaaggagaacaggaaaagggttgtgtttgcgaattgcttgaaattggacgagcattcactcgcaaatattgtg |
4016572 |
T |
|
| Q |
208 |
tttaatttgcaaataaacattctgaaatttgcataccaacatgtatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattg |
307 |
Q |
| |
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|||||| |||||||||||| ||||||||||||||||||||||||||||| | | || ||||| ||||||||||| ||||||||| | || |
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|
| T |
4016571 |
tttaatgctcaaataaacattaccaaatttgcataccaacatgtatcagcttctagagatgaatttcacaataagttcaacaattataacg---aagatg |
4016475 |
T |
|
| Q |
308 |
aatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggattttgtagtcatggatctatcttcttc |
407 |
Q |
| |
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| ||| ||||||| |||||||||||||||||||| |||||||| | ||||| || ||||||||||||||||||| ||||| ||| |||||| ||||||| |
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|
| T |
4016474 |
attctcatcaagcactttatgtgtatccagggagctgtgttccagattggtttgaatataagacaacaacggattatgtagccattgatctaccttcttc |
4016375 |
T |
|
| Q |
408 |
tacaccgcgttccc |
421 |
Q |
| |
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|||| ||| ||||| |
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| T |
4016374 |
tacatcgcattccc |
4016361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 3804320 - 3804171
Alignment:
| Q |
108 |
gggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--g |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||| | |
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|
| T |
3804320 |
gggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttaaaattggatgaataatctccctcgaatactg |
3804221 |
T |
|
| Q |
206 |
tgtttaatttgcaaataaacattctgaaatttgcataccaacatgtatca |
255 |
Q |
| |
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| |||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
3804220 |
tatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatca |
3804171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 3804173 - 3804113
Alignment:
| Q |
300 |
tcacattgaatcttatcaagctatttatgtgtatcc-agggagcagtgttccaaagtggtt |
359 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||| |
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|
| T |
3804173 |
tcacattgactcttatcaagctctttatgtgtatccaacggagcagtgttccaaagtggtt |
3804113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 4000467 - 4000384
Alignment:
| Q |
121 |
caatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata |
204 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||| ||| ||| ||||||||| || |||||||||||||||||||| |||| |
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|
| T |
4000467 |
caatttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgcttcaacttggatgaacattctctcgtaaata |
4000384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 3804429 - 3804352
Alignment:
| Q |
17 |
ctacaatatctagccataagatgttgccataaactacaaagtctgccagacctacctcaatctcttgaaattatactt |
94 |
Q |
| |
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||||| ||||||| ||| |||||||||||||||| ||| |||| |||| || |||||||||||||||||||||||| |
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|
| T |
3804429 |
ctacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttgaaattatactt |
3804352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 3922040 - 3922116
Alignment:
| Q |
305 |
ttgaatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggat |
381 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| || || ||||||||||||||||| ||||| |||||||||| |||| |
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|
| T |
3922040 |
ttgattcttatcaagcagtgtatgtgtatcctggaagtagtgttccaaagtggttggagtacaagacaacaatggat |
3922116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 4023396 - 4023307
Alignment:
| Q |
111 |
ttgttcccttcaa---tttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctc |
197 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |||| ||||||| ||| ||| |||||||| ||| |||||||||||||||||| |
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|
| T |
4023396 |
ttgttcccttcaacagtttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgctggaacttggatgaacattctctc |
4023307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 3921838 - 3921926
Alignment:
| Q |
111 |
ttgttcccttcaa---tttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctct |
196 |
Q |
| |
|
||||||||||||| || ||||||||| |||||| |||| ||||||||||| ||| ||||||||| || |||||||||| |||||| |
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|
| T |
3921838 |
ttgttcccttcaacagttgctgaacaattcaaggaaaacaagaaaagggttgagttctggaattgcttcaacttggatgaactttctct |
3921926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 3965538 - 3965603
Alignment:
| Q |
20 |
caatatctagccataagatgttgccataaactacaaagtctgccagacctacctcaatctcttgaa |
85 |
Q |
| |
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|||||||||| |||||||| ||||| ||| || |||| ||| ||||| || ||||||||||||||| |
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|
| T |
3965538 |
caatatctagacataagatattgccttaagctgcaaactctaccagagcttcctcaatctcttgaa |
3965603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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