View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_41 (Length: 405)
Name: NF19927_low_41
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 46016772 - 46017145
Alignment:
| Q |
19 |
tgtgctaccaaaccactctcaaggagtgtacaaattgtgtacc-tatgaaacaacttttcctaatttctaacaggtgacactgtttaacatgtacaatca |
117 |
Q |
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| T |
46016772 |
tgtgctaccaaaccactctcaaggagtgtacaaattgtgtaccctatgaaacaacttttcctaatttctaacaggtgacactgtttaacatgtacaatca |
46016871 |
T |
|
| Q |
118 |
aataactactctttctaaatctctgctattataaagtaagggtattatggttacaggtgcagtctgatacttgagtcacttagatttaatacagtacttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46016872 |
aataactactctttctaaatctctgctattataaagtaagggtattatggttacaggtgcagtctgatacttgagtcacttagatttaatacagtacttg |
46016971 |
T |
|
| Q |
218 |
gtacctgacaattttaattgcaagaaagcagtgatttattttttatgagaacgaaatgcaatgcaaannnnnnnatttgatgatataaaaggtttgtccc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
46016972 |
gtacctgacaattttaattgcaagaaagcagtgatttattttttatgagaacgaaatgcaatgcaaattttttgatttgatgatatgaaaggtttgtccc |
46017071 |
T |
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| Q |
318 |
accactacttagtagtacttgacagtgttgcatagccattttgagtacggttgtcgttttctttttcttcttct |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46017072 |
accactacttagtagtacttgacagtgttgcatagccattttgagtacggttgtcgttttctttttcttcttct |
46017145 |
T |
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