View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_46 (Length: 403)
Name: NF19927_low_46
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_46 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 26933087 - 26933482
Alignment:
| Q |
17 |
ataagtgtagacattggatccaagaagagtatttctttttatctaagttgagagnnnnnnnnnnnnnnntcgaaaacgtataaacatacggtgttgatgt |
116 |
Q |
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| T |
26933087 |
ataagtgtaggcataggatccaagaagagtatttctttttatctaagttgagagaaaaataacaaaaaatcgaaaacgtataaacatacggtgttgatgt |
26933186 |
T |
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| Q |
117 |
cgg-tttttatgtnnnnnnnnnnc-tctaaaatggtcgacttttannnnnnn-gtcataatcctctcaataaaaagaggttatgggagtccaaatttcaa |
213 |
Q |
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| T |
26933187 |
cgggtttttatgtaaaaaaaaaaaatctaaaatggtcgacttttattgtttttgtcataatcctctcaataaaaagaggttatgggagtccaaatttcaa |
26933286 |
T |
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| Q |
214 |
tgagaaggtaagtaaagtttggctaatatttcaaaaatgaagtgtatgtttttatttacggtgaacttaatgaaatcacggcgacattgtaattttgttg |
313 |
Q |
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| T |
26933287 |
tgagaaggtaagtaaagttttgctaatatttcaagaatgaagtgtatgtttctatttacggtgaacttaatgaaatcacagtgacattgtaattttgttg |
26933386 |
T |
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| Q |
314 |
aaattcatgagtgtaactaaaatcatgg-ttgcacactgtgatttgtgattcttcaaactcaccatg-----aaatactcataaaattgattagtt |
403 |
Q |
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||||||| ||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
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| T |
26933387 |
aaattcaagagtgtaactaaagtcatggtttgtgatttgtgatttgtgattctgcaaactcaccatgaatccaaatactcgtaaaattgattagtt |
26933482 |
T |
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