View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_47 (Length: 397)
Name: NF19927_low_47
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 46521467 - 46521096
Alignment:
| Q |
14 |
ataattctcacataaaataaaatatttcttttaactcactctttagtctttatgaacctatatatgctctataactctgaactctataaaccaa----gc |
109 |
Q |
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| T |
46521467 |
ataattctcacataaaataaaatatttcttttaactcactctttagtctttatgaacctatatatgctctataactctgaactctataaaccaaccaagc |
46521368 |
T |
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| Q |
110 |
tgaaaggaattgacttaatgcaacccaagtatttgttttcttattatgtggatttggtgaaacaaattaaggtacaagggtattgcttcaattatatacc |
209 |
Q |
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| T |
46521367 |
tgaaaggaattgacttaatgcaacccaagtatttgttttcttattatgtggatttggtgaaacaaattaaggtacaagggtattgcttcaattatatacc |
46521268 |
T |
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| Q |
210 |
tatacaaaatcttttgtaacaaaacagaactaacctcaataagcaataaccaattttttactagtcaacaattagttggaaaatcatgaatggcattgac |
309 |
Q |
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| T |
46521267 |
tatacaaaatctcttgtaacaaaacagaactaacctcaataagcaataaccaattttttactagtcaacaattagttggaaaatcatgaatggcattgac |
46521168 |
T |
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| Q |
310 |
atataaactattttatggaaaattacaaagggaatgcaaagggttagaggaaaaatgtaaaggcatgtcaag |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46521167 |
atataaactattttatggaaaattacaaagggaatgcaaagggttagaggaaaaatgtaaaggcatgtcaag |
46521096 |
T |
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