View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_49 (Length: 394)
Name: NF19927_low_49
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 10663153 - 10662798
Alignment:
| Q |
18 |
atttgagtatgacatataaagtcatccttaatttgtgatgttgtggttctaactgaatttcatcaaattagggcaaaataaaacaaaatattgatcatga |
117 |
Q |
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| T |
10663153 |
atttgagtatgacatataaagtcatgcttaatttgtgatgttgtggttctaagtgaatttcatcaaattagggcaaaataaaacaaaagattgatcatga |
10663054 |
T |
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| Q |
118 |
tttatgttaatattatgtctccgacgttcatgaatgttgtgtttacgatgatcaattttatcatctaaaaacgcttagcggcgctacttgttgttcactt |
217 |
Q |
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| T |
10663053 |
tttatattaatattatgtcttcgagattcatgaatgttgtgtttatgatgatcaattttatcatctaaaaacgtttagcggtgctacttgttgttcactt |
10662954 |
T |
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| Q |
218 |
gccctcaatccatgtgtaatttttctgtacatatatatttaggcagaaaatacaatttactatttttaatttactagactaattataaccaaannnnnnn |
317 |
Q |
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| T |
10662953 |
gccttcaacccatgtgtaatttttttttacatatatatttaggcagaaaatacaattt--------------actagactaattataacctaaatttttt |
10662868 |
T |
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| Q |
318 |
ngctttatgtggacagggtggtattcttcttattggcttccatttctcccactaattgtaagtataatct |
387 |
Q |
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| T |
10662867 |
tgctttatgtggacagggtggtattcttcttattggcttccatttctcccactaattgtaagtataatct |
10662798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 42659203 - 42659141
Alignment:
| Q |
126 |
aatattatgtctccgacgttcatgaatgttgtgtttacgatgatcaattttatcatctaaaaa |
188 |
Q |
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| T |
42659203 |
aatattatgtcttctaggttcatgaatgttgtgtttacgaggattaattttgtcatccaaaaa |
42659141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 8540529 - 8540573
Alignment:
| Q |
144 |
ttcatgaatgttgtgtttacgatgatcaattttatcatctaaaaa |
188 |
Q |
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| T |
8540529 |
ttcataaatgttgtgtttacgatgattgattttatcatccaaaaa |
8540573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 38815264 - 38815160
Alignment:
| Q |
132 |
atgtctccgacgttcatgaatgttgtgtttacgatgatcaattttatcatctaaaaacgcttagcggcgctacttgttgttcacttgccctcaatccatg |
231 |
Q |
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| T |
38815264 |
atgtctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttctattcatg |
38815165 |
T |
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| Q |
232 |
tgtaa |
236 |
Q |
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||||| |
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| T |
38815164 |
tgtaa |
38815160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 7483839 - 7483785
Alignment:
| Q |
147 |
atgaatgttgtgtttacgatgatcaattttatcatctaaaaacgcttagcggcgc |
201 |
Q |
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| T |
7483839 |
atgaatgttgtgtttacgaagattagttttgccatctaaaaaggcttagcggcgc |
7483785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 45974736 - 45974792
Alignment:
| Q |
132 |
atgtctccgacgttcatgaatgttgtgtttacgatgatcaattttatcatctaaaaa |
188 |
Q |
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| T |
45974736 |
atgtctcctaggttcatgaatgttgtgtttacaaggataaattttgtcatccaaaaa |
45974792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 38146026 - 38145970
Alignment:
| Q |
132 |
atgtctccgacgttcatgaatgttgtgtttacgatgatcaattttatcatctaaaaa |
188 |
Q |
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| T |
38146026 |
atgtctcctaggtccatgaacgttgtgtttacgatgattgattttgtcatctaaaaa |
38145970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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