View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_5 (Length: 740)
Name: NF19927_low_5
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 26 - 721
Target Start/End: Original strand, 48596630 - 48597325
Alignment:
| Q |
26 |
aaagcacaacagtttcaaatttctatacttatgtgagcaaagaatgtgacttaccagatatcactagactaaaaataatcatagcctgcatccagaggag |
125 |
Q |
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| T |
48596630 |
aaagcacaacagtttcaaatttctatacttatgtgagcaaagaatgtgacttaccagatatcactagactaaaaataatcatagcctgcatccagaggag |
48596729 |
T |
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| Q |
126 |
agaaatttattatatctcaattgaagataacattgaataaatcccgcctattcggttccatcaagataatcaaaagataagaccctccaaggcatcttag |
225 |
Q |
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| T |
48596730 |
agaaatttattatatctcaattgaagataacattgaataaatcccgcctattcggttccatcaagataatcaaaagataagaccctccaaggcatcttag |
48596829 |
T |
|
| Q |
226 |
atgttcatcagaaaaagatacctttaaaggctaattaatatggcgacgactaagataaagaagtgtttcatatggtggactagtgcttaaaaatggtttc |
325 |
Q |
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| T |
48596830 |
atgttcatcagaaaaagatacctttaaaggctaattaatatggtgacgactaagataaagaagtgtttcatatggtggactagtgcttaaaaatggtttc |
48596929 |
T |
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| Q |
326 |
aaaatctaacaataacagatgccactccttgcaagtagaagctcatagtattacccgtccttctgacggaaatagtgacccaataggtgtcggtttgtcn |
425 |
Q |
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| T |
48596930 |
aaaatctaacaataacagatgccactccttgcaagtagaagctcatagtattacccgtccttctgatggaaatagtgacccaataggtgtcggtttgtca |
48597029 |
T |
|
| Q |
426 |
nnnnnnnnnnnnnncagaaaaacaaatattagtgcttcaaaacttaacttgtatctgttttctcttattttgtcgaaacaacatcgatcaagtcactttt |
525 |
Q |
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| T |
48597030 |
aaaaaaaaaaaaaacagaaaaacaaatattagtgcttcaaaacttaacttgtatctgttttctcttattttgtcaaaacaacatcgatcaagtcactttt |
48597129 |
T |
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| Q |
526 |
tcagccataaggacatgaatgattctgaactctacttaaagggggtgacatccttcgctgtcgaagtttggagcagttttcaagcatcagtctactgtcg |
625 |
Q |
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| T |
48597130 |
tcagccataaggacatgaatgattctgaactctacttaaagggggtgacatccttcgctgtcgaagtttggagcagctttcaagcatcagtctactgtcg |
48597229 |
T |
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| Q |
626 |
accacatgagacacttcctcaccctagcaattatccattaatatatgtaattgaggatggcatctcttacccaacgagtctttgagaactctcccc |
721 |
Q |
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| T |
48597230 |
accacatgagacacttcctcaccctagcaattatccattaatatatgtaattgaggatggcatctcttacccaacgagtctttgagaactctcccc |
48597325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 522
Target Start/End: Original strand, 13837146 - 13837225
Alignment:
| Q |
444 |
aaaacaaatattagtgcttcaaaacttaacttgtatctgttttctctt-attttgtcgaaacaacatcgatcaagtcact |
522 |
Q |
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||||||||||||| ||| |||||||| || |||||| ||||||||||| |||||| ||| ||||| |||||| |||||| |
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| T |
13837146 |
aaaacaaatattaatgcctcaaaactcaaattgtatttgttttctcttggttttgttgaatcaacaccgatcaggtcact |
13837225 |
T |
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