View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_50 (Length: 392)
Name: NF19927_low_50
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 379
Target Start/End: Original strand, 1348152 - 1348507
Alignment:
| Q |
22 |
ctaacaacattcacatcatcactatatatagctggccttttagcatctttctttgcttcatcaatcacaagagtctttggtcgcaaaccatcaattcttg |
121 |
Q |
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| T |
1348152 |
ctaacaacattcacatcatcactatatatagctggccttttagcatctttctttgcatcatcaatcacaagagcctttggtcgcaaaccatcaattcttg |
1348251 |
T |
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| Q |
122 |
taggtggtgctgcattccttattggagcagctcttggtggtgctgcacttaatatatacatgctaatacttggtcgtgttcttcttggagttggaattgg |
221 |
Q |
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| T |
1348252 |
taggtggtgctgcattccttattggagcagctcttggtggtgctgcacttaatatatacatgctaatacttggtcgtgttcttcttggagttggaattgg |
1348351 |
T |
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| Q |
222 |
ctttgctaatcaggta---------tttctccaattacaatgtttttctaacttatttgatttacaagtcaatgataaaaaagagagataatggcactct |
312 |
Q |
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| T |
1348352 |
ctttgctaatcaggtataatcaatctttctccaattacaatgtttttcaaatttatttgatttacatgtcaatgatgaaaaagagagataatggcacttt |
1348451 |
T |
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| Q |
313 |
ttaggccacagatttagaaattttagtgatagtgacataaatatgtaagttaatatatggctgcctt |
379 |
Q |
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| T |
1348452 |
ttaggccacatatttagaa-----------agtgacataaatatgtaagttaatatatggttgcctt |
1348507 |
T |
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