View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_51 (Length: 391)
Name: NF19927_low_51
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 33499125 - 33498767
Alignment:
| Q |
19 |
tgcaaaatcaacacaattcaattgagctattcgcactcacactactcaagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499125 |
tgcaaaatcaacacaattcaattgagctattcgctctcacactactcaagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttcc |
33499026 |
T |
|
| Q |
119 |
atttgcattgcacataatgttggcagaaataacatcaatcttatgtttctctaacaccaaagcaattgtggtcaagagaccaggcttcttagttgcacaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33499025 |
atttgcattgcacataatgttggcagaaataacatcaatcttatgtttctccaacaccaaagcaattgtggtcaagagaccaggcttcttagttgaacaa |
33498926 |
T |
|
| Q |
219 |
atgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtctgaaaacctacttgttgtggtggagatattgaaaatgcat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33498925 |
atgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtttgaaaacctacttgttgtggtggagatattgaaaatgcat |
33498826 |
T |
|
| Q |
319 |
ttgaaggatttgaagttacaattgcattagacaagttattattataacttgaggatcct |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33498825 |
ttgaaggatttgaagttacaattgcattagacaagttattattataacttgaggatcct |
33498767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 66 - 377
Target Start/End: Complemental strand, 33485867 - 33485556
Alignment:
| Q |
66 |
aagagaagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
165 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485867 |
aagaggagagaaggtttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtt |
33485768 |
T |
|
| Q |
166 |
tctctaacaccaaagcaattgtggtcaagagaccaggcttcttagttgcacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttg |
265 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485767 |
tctccaacaccaaagcaattgtggtcaagagaccaggcttcttagttgaacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttg |
33485668 |
T |
|
| Q |
266 |
agaagaccatgtctgaaaacctacttgttgtggtggagatattgaaaatgcatttgaaggatttgaagttacaattgcattagacaagttattattataa |
365 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485667 |
agaagaccatgtttgaaaacctacttgttgtggtggagatattgaaaatgcatttgaaggatttgaagttacaattgcattagacaagttattattataa |
33485568 |
T |
|
| Q |
366 |
cttgaggatcct |
377 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33485567 |
cttgaggatcct |
33485556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 33486108 - 33486058
Alignment:
| Q |
19 |
tgcaaaatcaacacaattcaattgagctattcgcactcacactactcaaga |
69 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33486108 |
tgcaaaattaagacaattcaattgagctattcacactcgtactactcaaga |
33486058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University