View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_54 (Length: 380)
Name: NF19927_low_54
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 12131530 - 12131805
Alignment:
| Q |
1 |
agtactgttctgtttaaagctttgcaaccattttacaagggatgacggcacattaatagcatttgcagtatcaggatcattttcacaagcacgaggcacc |
100 |
Q |
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| T |
12131530 |
agtactgttctgtttaaagctttgcaaccattttacgagggatgacggcacattaatagcatttgcagtatcaggatcattttcacaagcacgaggcacc |
12131629 |
T |
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| Q |
101 |
gagatggcagcacaattgacaaccacatcaggctgccattaacaaacaaacagagaattgtcaatccaatattaaaagcttaaactcttatttgtaagca |
200 |
Q |
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| T |
12131630 |
gagatggcagcacaattgacaaccacatcaggctgccattaacaaacaaacagagaattgtcaatccaatattaaaagcttaaactcttatttgtaagca |
12131729 |
T |
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| Q |
201 |
actggcatctatccaacttatagatgtttgaaaatttgttacataaaagaccaaaccaaacatgctttatctcttt |
276 |
Q |
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| T |
12131730 |
actggcatctatccaacttatagatgtttgaaaatttgttacataaaagaccaaaccaaacatgctttatctcttt |
12131805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 12131856 - 12131938
Alignment:
| Q |
276 |
tggtatagcaagaataatgagtgactatcaaattgagaggtaaaggagataacagcctttttcttatataaacacgaactctg |
358 |
Q |
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| T |
12131856 |
tggtatagcaagaataatgagtgactatcaaattgagaggtaaaggagataacagcctttttcttatataaacacgaactctg |
12131938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 24403626 - 24403745
Alignment:
| Q |
1 |
agtactgttctgtttaaagctttgcaaccattttacaagg---gatgacggcacattaatagcatttgcagtatcaggatcattttcacaagcacgaggc |
97 |
Q |
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| T |
24403626 |
agtactgttctgtttaaggctttgcagccattttacaagggacgatgatggtacatcgatagcatgtgtagtatc-ggatcgatttcacaagcatgagga |
24403724 |
T |
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| Q |
98 |
accgagatggcagcacaattga |
119 |
Q |
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|| || |||||||||||||||| |
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| T |
24403725 |
acaga-atggcagcacaattga |
24403745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 14694393 - 14694428
Alignment:
| Q |
276 |
tggtatagcaagaataatgagtgactatcaaattga |
311 |
Q |
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| T |
14694393 |
tggtatagcaagaataatgagtgactatcaagttga |
14694428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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