View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_57 (Length: 371)
Name: NF19927_low_57
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 49074554 - 49074896
Alignment:
| Q |
18 |
gtaactcctcaaagggctaaattgtctttaagaagacaatgtgacttagttaagtctgatctttatagtaatatatctaaggtattttctgaaagatatg |
117 |
Q |
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| T |
49074554 |
gtaactcctcaaagggctaaattgtctttaagaagacaatgtgacttagttaagtctgatctttatagtaatatatctaaggtattttctgaaagatatg |
49074653 |
T |
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| Q |
118 |
catataccttagtgcttgtaatcggttggaagtatcgtggactccttgactttactaaggaaatactctttgtaaaaggaggattgggcataactgtcta |
217 |
Q |
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| T |
49074654 |
catataccttagtgcttgtaatcggttagaagtatcgtggactcgttgactttactaaggaaatactctttgtaaaaggaggattgggcataactgtcta |
49074753 |
T |
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| Q |
218 |
agtttggagataaatcagtataaaactcaacatgtctttatctctatccatgtttctctttacttgacgttctatttaaataactctctttcaaagaaga |
317 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49074754 |
agtttggagataaatcagtataaaactcaacgtgtctttatctctatccatgtttctctttacttaacgttctatttaaataactctctttcaaagaaga |
49074853 |
T |
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| Q |
318 |
aaaaggaaaacattttaaaatttatcatcattcaaacattctt |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49074854 |
aaaaggaaaacattttaaaatttatcatcattcaaacattctt |
49074896 |
T |
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