View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_59 (Length: 359)

Name: NF19927_low_59
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_59
NF19927_low_59
[»] chr8 (3 HSPs)
chr8 (14-114)||(31372213-31372312)
chr8 (14-112)||(11659323-11659421)
chr8 (14-111)||(11668493-11668590)
[»] chr7 (4 HSPs)
chr7 (14-123)||(32248996-32249105)
chr7 (14-112)||(33426452-33426550)
chr7 (31-123)||(47815579-47815672)
chr7 (31-89)||(37504412-37504471)
[»] chr1 (4 HSPs)
chr1 (14-123)||(28851104-28851213)
chr1 (31-123)||(2170120-2170212)
chr1 (31-105)||(39482787-39482862)
chr1 (31-95)||(6844049-6844114)
[»] chr6 (1 HSPs)
chr6 (14-111)||(10460836-10460933)
[»] chr4 (1 HSPs)
chr4 (53-123)||(53239111-53239181)
[»] chr2 (1 HSPs)
chr2 (31-95)||(4867981-4868046)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 31372213 - 31372312
Alignment:
Q  14 taattctataaatcctatcaaacttacttgtttcatctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtacg 113  Q
    ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  31372213 taattctataa-tcctatcaaacttacttgttccatctgttaaaaaactattggccattttagtttgaagtattggtacatacaaatatatgagtgtacg 31372311  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 11659421 - 11659323
Alignment:
Q  14 taattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtac 112  Q
    ||||||||||| |||  ||| ||||||||||| ||| |||||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  11659421 taattctataa-tccagtcatacttacttgttccatgctgtcaaaaatctattgaccattttaatttggagtattggtacatacaaatatatgagtgtac 11659323  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 11668590 - 11668493
Alignment:
Q  14 taattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgta 111  Q
    ||||||||||| |||  ||| |||||||||||  || |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  11668590 taattctataa-tccagtcatacttacttgttctatgctgtcaaaaatctattggccattttaatttggagtattggtacatacaaatatatgggtgta 11668493  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 32248996 - 32249105
Alignment:
Q  14 taattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtac 112  Q
    ||||||||||| |||  ||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  32248996 taattctataa-tccagtcaaacttacttgttccatgctatcaaaaaactattggtcattttaatttggagtattggtacatacaaatatatgggtgtac 32249094  T
Q  113 ggcggaaggag 123  Q
    ||  |||||||    
T  32249095 ggtagaaggag 32249105  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 33426550 - 33426452
Alignment:
Q  14 taattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtac 112  Q
    ||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||  |||||||||||||||||||| |||||||||||||||| ||||||    
T  33426550 taattctataa-tccaatcaaacttacttgttccatgctgtcaaaaaactattgaccattttagtttggagtattgatacatacaaatatatgggtgtac 33426452  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 47815579 - 47815672
Alignment:
Q  31 tcaaacttacttgtttcatct-gtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtacggcggaaggag 123  Q
    ||||||||| ||||| ||| | |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||  |||||||    
T  47815579 tcaaacttatttgttccatgttgtcaaaaaactattggccattttagtttggagtattgttacatacaaatatatgggtgtacggtagaaggag 47815672  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 37504412 - 37504471
Alignment:
Q  31 tcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattgg 89  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||    
T  37504412 tcaaacttacttgttccatgctgtcaaaaaactattcgtcattttaatttggagtattgg 37504471  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 28851213 - 28851104
Alignment:
Q  14 taattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtac 112  Q
    ||||||||||| |||  ||||||||||||||| ||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||||    
T  28851213 taattctataa-tccagtcaaacttacttgttccatgctgtcaaaaaactattggccattttagtctagagtattggtacatacaaatatatgggtgtac 28851115  T
Q  113 ggcggaaggag 123  Q
    ||  |||||||    
T  28851114 ggaagaaggag 28851104  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 2170212 - 2170120
Alignment:
Q  31 tcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtacggcggaaggag 123  Q
    ||||||||||||||| ||| |||||||||| ||||||  |||||||||| |||||||||||||||||||||||||| ||||||||  |||||||    
T  2170212 tcaaacttacttgttgcatgctgtcaaaaa-ctattgaccattttagttaggagtattggtacatacaaatatatgggtgtacggtagaaggag 2170120  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 39482787 - 39482862
Alignment:
Q  31 tcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatg 105  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||| |||| ||||||| || |||||||| ||||    
T  39482787 tcaaacttacttgtttcatgctgtcaaaaaactattgaccattttaatttgaagtattgatatatacaaatgtatg 39482862  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 6844049 - 6844114
Alignment:
Q  31 tcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacata 95  Q
    ||||||||||||||| ||| |||||| |||||||||||||| ||| ||||||||||| | ||||||    
T  6844049 tcaaacttacttgttccatgctgtcagaaaactattggtcactttggtttggagtatcgatacata 6844114  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 10460933 - 10460836
Alignment:
Q  14 taattctataaatcctatcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgta 111  Q
    ||||||||||| |||  ||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||||    
T  10460933 taattctataa-tccagtcaaacttacttgttccatgctgtcaaaaaactattggccattttagtttggaatattgatacatacaaatatatgggtgta 10460836  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 53239181 - 53239111
Alignment:
Q  53 tcaaaaaactattggtcattttagtttggagtattggtacatacaaatatatgagtgtacggcggaaggag 123  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  53239181 tcaaaaaactattgaccattttagtttggagtattggtacatacaaatatatgggtgtacggtagaaggag 53239111  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 4867981 - 4868046
Alignment:
Q  31 tcaaacttacttgtttcat-ctgtcaaaaaactattggtcattttagtttggagtattggtacata 95  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||| ||||||||    
T  4867981 tcaaacttacttgttccatactgtcagaaaactattggtcattttggtttggagtatcggtacata 4868046  T

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