View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_6 (Length: 718)

Name: NF19927_low_6
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_6
NF19927_low_6
[»] chr4 (1 HSPs)
chr4 (7-718)||(50386467-50387182)


Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Complemental strand, 50387182 - 50386467
Alignment:
Q  7 tcataaatatgctttcatttcagataaaggaaaaaagatacaatgatttcttcaagnnnnnnnnnnnnnn--tacaagaatgatcaatcatgtcaaccac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||    
T  50387182 tcataaatatgctttcatttcagataaaggaaaaaagatacaatgatttcttcaagaaaaagaaaaaaaaaatacaagaatgatcaatcatgtcaaccac 50387083  T
Q  105 aacgataattttcatcactttattattaaaacctagctaaaaatccctaggatcaacaaacacattcccgagttgtctcttcatcacctccaccaattca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50387082 aacgataattttcatcactttattattaaaacctagctaaaaatccctaggatcaacaaacacattcccgagttgtctcttcatcacctccaccaattca 50386983  T
Q  205 tcattttcatcatcactgttatttccaagtctttttgtgtaccacatatcatcaatacacgacatagaatcaattttaggaacatagtttacaggtggat 304  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  50386982 tcattttcatcatcactgtgatttccaagtctttttgtgtaccacatatcatcaatacacgacatagaatcaattttaggaacatggtttacaagtggat 50386883  T
Q  305 caccaaaccctaactcagttataacaaccctacactcctttaatttttctcctaatcttgatgtaaacctccatattgattccattagcccaccaagatt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386882 caccaaaccctaactcagttataacaaccctacactcctttaatttttctcctaatcttgatgtaaacctccatattgattccattagcccaccaagatt 50386783  T
Q  405 ctctccctctccatgaagtccataaagaaaaagaaaccc-aaatgtactgttgttacacattgagtcaaacattctcaaacaa-ggacatattttgtcct 502  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50386782 ctctccctctccatgaagtccataaagaaaaagaaacccaaaatgtactgttgttacacattgagtcaaacattctcaaacaagggacatattttgtcct 50386683  T
Q  503 ttgcatgatttaatgtcgcatgaagaaacctaagtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaact 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386682 ttgcatgatttaatgtcgcatgaagaaacctaagtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaact 50386583  T
Q  603 gaaaatgatccatgatgagcttgttgtacttttatgggtaataatgtcttcaatgttgagtttgaagccttcatctttgtaataactaacccaagttcct 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386582 gaaaatgatccatgatgagcttgttgtacttttatgggtaataatgtcttcaatgttgagtttgaagccttcatctttgtaataactaacccaagttcct 50386483  T
Q  703 aggctgagtttttctt 718  Q
    ||||||||||||||||    
T  50386482 aggctgagtttttctt 50386467  T

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