View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_62 (Length: 351)
Name: NF19927_low_62
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 11855716 - 11855383
Alignment:
| Q |
1 |
caacttgcaaaactagggaacaaccatgtgacagctacttgcggtgctcgcaacattgaccttatcaggagcttaggtgccgatgaggttctcgactaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11855716 |
caacttgcaaaactagggaacaaccatgtgacagctacttgtggtgctcgcaacattgaccttatcaagagcttaggtgccgatgaggttctcgactaca |
11855617 |
T |
|
| Q |
101 |
agactccagaaggagcatcgctaacaagtccttctggtaggaaatatgatgtagtgatacattgtactgctggaataccatggtcagtttttgagcctaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11855616 |
agactccagaaggagcatcgctaaaaagtccttctggtaggaaatatgatgtagtgatacattgtactgctggaataccatggtcagtttttgagcctaa |
11855517 |
T |
|
| Q |
201 |
tttgtcggaaaatggggttgtagcggatataacacctagcccgagatcaatgtggacttttgcggtgaagaaacttaccttttcgaagaagcagtgggtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11855516 |
tttgtcggaaaatggggttgtagcggatataacacctggcccgagatcaatgtggacttttgcggtgaagaaacttaccttttcgaagaagcagtgggtg |
11855417 |
T |
|
| Q |
301 |
-cgnnnnnnnnaactccaactcgcgagggcttag |
333 |
Q |
| |
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|| ||||||||||||||||||||||| |
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| T |
11855416 |
ccgtttcttttaactccaactcgcgagggcttag |
11855383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 11430767 - 11430477
Alignment:
| Q |
1 |
caacttgcaaaactagggaacaaccatgtgacagctacttgcggtgctcgcaacattgaccttatcaggagcttaggtgccgatgaggttctcgactaca |
100 |
Q |
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|||||||| |||||||| ||||||||||| ||||| ||||| |||||| | || ||||| ||||||| ||||||||| |||||||||||||||||||||| |
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| T |
11430767 |
caacttgccaaactaggaaacaaccatgtcacagccacttgtggtgctagaaatattgagcttatcaagagcttaggcgccgatgaggttctcgactaca |
11430668 |
T |
|
| Q |
101 |
agactccagaaggagcatcgctaacaagtccttctggtaggaaatatgatgtagtgatacattgtactgctggaataccatggtcagtttttgagcctaa |
200 |
Q |
| |
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| T |
11430667 |
agactccagagggagcatcactgaagagtccatctggtaggaaatatgatgcagtaatacattgtactgctggaataccatggtcaacttttgaaccaaa |
11430568 |
T |
|
| Q |
201 |
tttgtcggaaaatggggttgtagcggatataacacctagcccgagatcaatgtggacttttgcggtgaagaaacttaccttttcgaagaag |
291 |
Q |
| |
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|||| | |||||||| |||| | ||| |||||||| | || || ||| || || | |||| ||||||||||||||||||| |||||| |
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| T |
11430567 |
tttgacagaaaatggaattgttgtagatttaacacctggaccaagttcattgatgaaatatgcgttgaagaaacttaccttttcaaagaag |
11430477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 11564699 - 11564989
Alignment:
| Q |
1 |
caacttgcaaaactagggaacaaccatgtgacagctacttgcggtgctcgcaacattgaccttatcaggagcttaggtgccgatgaggttctcgactaca |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| ||||| |||||| | || ||||| ||||||| ||||||||| |||||||||||||||||||||| |
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| T |
11564699 |
caacttgccaaactaggaaacaaccatgtcacagccacttgtggtgctagaaatattgagcttatcaagagcttaggcgccgatgaggttctcgactaca |
11564798 |
T |
|
| Q |
101 |
agactccagaaggagcatcgctaacaagtccttctggtaggaaatatgatgtagtgatacattgtactgctggaataccatggtcagtttttgagcctaa |
200 |
Q |
| |
|
|||||||||| |||||||| || | ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| || || |
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| T |
11564799 |
agactccagagggagcatcactgaagagtccatctggtaggaaatatgatgcagtaatacattgtactgctggaataccatggtcaacttttgaaccaaa |
11564898 |
T |
|
| Q |
201 |
tttgtcggaaaatggggttgtagcggatataacacctagcccgagatcaatgtggacttttgcggtgaagaaacttaccttttcgaagaag |
291 |
Q |
| |
|
|||| | |||||||| |||| | ||| |||||||| | || || ||| || || | |||| ||||||||||||||||||| |||||| |
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| T |
11564899 |
tttgacagaaaatggaattgttgtagatttaacacctggaccaagttcattgatgaaatatgcgttgaagaaacttaccttttcaaagaag |
11564989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 11807172 - 11806878
Alignment:
| Q |
1 |
caacttgcaaaactagggaacaaccatgtgacagctacttgcggtgctcgcaacattgaccttatcaggagcttaggtgccgatgaggttctcgactaca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||| || ||||||||||| ||| || | | | ||||||| || || |||||||| ||||||| |
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|
| T |
11807172 |
caacttgccaaactagggaacaaccatgtgaccgccacttgtggcgctcgcaacatcgactttgttaagggcttaggcgctgacgaggttcttgactaca |
11807073 |
T |
|
| Q |
101 |
agactccagaaggagcatcgctaacaagtccttctggtaggaaatatgatgtagtgatacattgtactgctggaataccatggtcagtttttgagcctaa |
200 |
Q |
| |
|
|||||||||| |||||||| || | ||||| ||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||| |||||| ||||| |
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| T |
11807072 |
agactccagagggagcatcactgaagagtccgtctggtaggaaatatgatgcagtgataaattttaccgctggaataccatggtcaacttttgatcctaa |
11806973 |
T |
|
| Q |
201 |
tttgtcggaaaatggggttgtagcggatataacacctagcccgagatcaatgtggacttttgcggtgaagaaacttaccttttcgaagaagcagt |
295 |
Q |
| |
|
|||| ||||||||| |||| | |||| || || || | | ||| ||||||| |||||||| | ||||||||||||| ||||||||||| |||| |
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|
| T |
11806972 |
tttgagtgaaaatgggattgtcgtggatttagcaactggtctgagttcaatgttgacttttgagctgaagaaacttacattttcgaagaaacagt |
11806878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 11838444 - 11838144
Alignment:
| Q |
1 |
caacttgcaaaactagggaacaaccatgtgacagctacttgcggtgctcgcaacattgaccttatcaggagcttaggtgccgatgaggttctcgactaca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||| | | | ||||||||| || || |||||||| ||||||| |
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| T |
11838444 |
caacttgccaaactagggaacaaccacgtgacagccacttgtggtgctcgcaacattgacttcgttaagagcttaggcgctgacgaggttcttgactaca |
11838345 |
T |
|
| Q |
101 |
agactccagaaggagcatcgctaacaagtccttctggtaggaaatatgatgtagtgatacattgtactgctggaataccatggtcagtttttgagcctaa |
200 |
Q |
| |
|
| ||||| || ||| |||| || | ||||| ||||||| |||||||||| ||| |||||||| || |||||||||| |||||| |||||| ||||| |
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|
| T |
11838344 |
aaactccggagggaacatcactgaagagtccatctggtaaaaaatatgatgcagtaatacattgcaccactggaataccgtggtcaacttttgatcctaa |
11838245 |
T |
|
| Q |
201 |
tttgtcggaaaatggggttgtagcggatataacacctagcccgagatcaatgtggacttttgcggtgaagaaacttaccttttcgaagaagcagtgggtg |
300 |
Q |
| |
|
|||| ||||| || ||||| | |||| |||||||| | || || ||||||| ||||||||| ||||||||||||| ||||||||||||| || |||| |
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|
| T |
11838244 |
tttgagtgaaaaaggagttgtcgtggatttaacacctggtcctagttcaatgttgacttttgcactgaagaaacttactttttcgaagaagcggttggtg |
11838145 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
11838144 |
c |
11838144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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