View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_64 (Length: 349)

Name: NF19927_low_64
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_64
NF19927_low_64
[»] chr3 (8 HSPs)
chr3 (64-280)||(3817589-3817804)
chr3 (113-276)||(5164616-5164779)
chr3 (63-259)||(27149097-27149293)
chr3 (115-276)||(8434170-8434334)
chr3 (64-99)||(5165391-5165426)
chr3 (64-99)||(8435461-8435496)
chr3 (64-99)||(27149989-27150024)
chr3 (299-331)||(3817549-3817581)
[»] chr6 (1 HSPs)
chr6 (64-277)||(31742046-31742258)
[»] chr7 (1 HSPs)
chr7 (63-183)||(48119330-48119450)
[»] chr5 (3 HSPs)
chr5 (18-67)||(37843875-37843924)
chr5 (18-67)||(37851358-37851407)
chr5 (19-67)||(37838029-37838077)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 64 - 280
Target Start/End: Complemental strand, 3817804 - 3817589
Alignment:
Q  64 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 163  Q
    ||||||||||| |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817804 tactccctccgatcctttataaaagagacaatttgaaacttttttttt-tcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 3817706  T
Q  164 tccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtac 263  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||||||||    
T  3817705 tccatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttgatacatattccccatgttaaactactttagccgtac 3817606  T
Q  264 acacagaccaacacatg 280  Q
    |||||||||||||||||    
T  3817605 acacagaccaacacatg 3817589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 5164616 - 5164779
Alignment:
Q  113 tcctttttataagaaaatctctttaaatttaaactttattaaatatgtaattccatttatacccttattaagttggagacatacaacctattcctatgca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||    
T  5164616 tcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatttcatttatacccttattaagttggagacatgcaacctattctaatgca 5164715  T
Q  213 aatgcatttattatgatacatattccccatattgaattactttagccgtacacacagaccaaca 276  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  5164716 aatgcatttattttgatacatattccccatgttgaactactttagcagtagacacagaccaaca 5164779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 27149097 - 27149293
Alignment:
Q  63 atactccctccggtcctttataaaagagacaatttgaaacnnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaa 162  Q
    |||||||||||||||||||||| |||||||||||| ||||        ||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  27149097 atactccctccggtcctttatacaagagacaatttaaaacttttttttggtcctttttataagaaaatctctttaaattcaaactttatcaaatatgtaa 27149196  T
Q  163 ttccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagcc 259  Q
    || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||| ||||| || |||||||    
T  27149197 tttcatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttggtacatattccacatgttgaactattttagcc 27149293  T

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Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 8434170 - 8434334
Alignment:
Q  115 ctttttataagaaaatctctttaaatttaaactttattaaata---tgtaattccatttatacccttattaagttggagacatacaacctattcctatgc 211  Q
    ||||||||||||| | |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8434170 ctttttataagaatacctctttaaatttaaactttattaaatagtatgtaattccatttatacccttattaagttggagacatgcaacctattccaatgc 8434269  T
Q  212 aaatgcatttattatgatacatattccccatattgaattactttagccgtacacacagaccaaca 276  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  8434270 aaatgcatttagtttgatacatattccccatgttgaactactttagccgtacacacaaaccaaca 8434334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 5165426 - 5165391
Alignment:
Q  64 tactccctccggtcctttataaaagagacaatttga 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  5165426 tactccctccggtcctttataaaagagacaatttga 5165391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 8435496 - 8435461
Alignment:
Q  64 tactccctccggtcctttataaaagagacaatttga 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  8435496 tactccctccggtcctttataaaagagacaatttga 8435461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 27150024 - 27149989
Alignment:
Q  64 tactccctccggtcctttataaaagagacaatttga 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  27150024 tactccctccggtcctttataaaagagacaatttga 27149989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 3817581 - 3817549
Alignment:
Q  299 tagttttcttgttggcgggtacattcctctaaa 331  Q
    |||||||||||||||||||||||||| ||||||    
T  3817581 tagttttcttgttggcgggtacattcatctaaa 3817549  T

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Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 64 - 277
Target Start/End: Original strand, 31742046 - 31742258
Alignment:
Q  64 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 163  Q
    |||||||| ||||| |||||| ||||||||||||||||         |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31742046 tactcccttcggtcatttatacaagagacaatttgaaa-tattttttggtcttttttataagaaaatctctttaaatttaaactttattaaatatgtaat 31742144  T
Q  164 tccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtac 263  Q
    | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  31742145 ttcatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttgatacatattccccatgttgaactactttagccgtac 31742244  T
Q  264 acacagaccaacac 277  Q
    |||||| |||||||    
T  31742245 acacaggccaacac 31742258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 48119330 - 48119450
Alignment:
Q  63 atactccctccggtcctttataaaagagacaatttgaaacnnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaa 162  Q
    ||||||||||||||||||| || |||||||||||||| ||        ||||||||||||||||||  ||||||||||||||||||||| ||||||  ||    
T  48119330 atactccctccggtcctttttataagagacaatttgagactttcttttggtcctttttataagaaacactctttaaatttaaactttatcaaatatacaa 48119429  T
Q  163 ttccatttatacccttattaa 183  Q
    ||||||||| | |||||||||    
T  48119430 ttccatttaaaaccttattaa 48119450  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 37843924 - 37843875
Alignment:
Q  18 catatgcattctctgtcacgggaaacaatgtaaacatgttagaaaatact 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37843924 catatgcattctctgtcacgggaaacaatgtaaacatgttagaaaatact 37843875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 37851407 - 37851358
Alignment:
Q  18 catatgcattctctgtcacgggaaacaatgtaaacatgttagaaaatact 67  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||||||    
T  37851407 catatgcattctctgtcacagataacaatgcaaacatgttagaaaatact 37851358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 37838077 - 37838029
Alignment:
Q  19 atatgcattctctgtcacgggaaacaatgtaaacatgttagaaaatact 67  Q
    ||||||||| |||||||| | |||||||| |||||||||||| ||||||    
T  37838077 atatgcattttctgtcacagaaaacaatgcaaacatgttagagaatact 37838029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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