View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_66 (Length: 345)
Name: NF19927_low_66
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_66 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 47572757 - 47572414
Alignment:
| Q |
2 |
gcacgaggaattgttggtggtggaggtggtggcccccaagcaacattgttgtgtgccttgtggaaaggatttaagtcaaatttaagaccacaactgggat |
101 |
Q |
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| T |
47572757 |
gcacgaggaattgttggtggtggaggcggtggcccccaagcaacattgttgtgtgccttgtggaaaggatttaagtcaaatttaagaccacaactgggat |
47572658 |
T |
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| Q |
102 |
aaaatattgctcctccaaattttcctctgcaacaactagttggaatttctgctatggcatcgctaagacaccagctacagttttctgaagataggtatgg |
201 |
Q |
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| T |
47572657 |
aaaatattgctcctccagattttcctctgcaacaactagttggaatttctgctatggcatcgctaagacaccagctacagttttctgaagataggtatgg |
47572558 |
T |
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| Q |
202 |
gacgcaccaaacataaccatatagtttttggttgtctgtgatattcactgacttatcagccaattttccagaagcatttgctgcctcgtttctcaaatcg |
301 |
Q |
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| T |
47572557 |
gacgcaccaaacataaccatatagtttttggttgtctgtgatattcactgacttatcagccaattttccagaagcatttgctgcctcgtttctcaaatcg |
47572458 |
T |
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| Q |
302 |
ttcaacatatcccagagaatgttgttgaagcgtccaacttcacc |
345 |
Q |
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| T |
47572457 |
ttcaacatatcccagagaatgttgttgaagcgtccaacttcacc |
47572414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 46 - 345
Target Start/End: Complemental strand, 47582411 - 47582112
Alignment:
| Q |
46 |
attgttgtgtgccttgtggaaaggatttaagtcaaatttaagaccacaactgggataaaatattgctcctccaaattttcctctgcaacaactagttgga |
145 |
Q |
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| T |
47582411 |
attgtcgtctgccttgtggaatggatataattcaaatctaacaccacaactgggatataatattgtgcctccagattttcctctgcagcaactggttgga |
47582312 |
T |
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| Q |
146 |
atttctgctatggcatcgctaagacaccagctacagttttctgaagataggtatgggacgcaccaaacataaccatatagtttttggttgtctgtgatat |
245 |
Q |
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| T |
47582311 |
acttcagctatggcatcactaagacaccagctgcagttctctgcagataggcatgggaggcaccaagcaccgccatatactttttggttttctgtgaggt |
47582212 |
T |
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| Q |
246 |
tcactgacttatcagccaattttccagaagcatttgctgcctcgtttctcaaatcgttcaacatatcccagagaatgttgttgaagcgtccaacttcacc |
345 |
Q |
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| T |
47582211 |
tcactgacttgacagcaaattttgcagaagcatttccagtctcccttctcaaatcgtttaacatatcccaaagaatgttgttgaagcgcccaacgtcacc |
47582112 |
T |
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