View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_67 (Length: 342)

Name: NF19927_low_67
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_67
NF19927_low_67
[»] chr3 (9 HSPs)
chr3 (57-273)||(3817589-3817804)
chr3 (106-269)||(5164616-5164779)
chr3 (57-252)||(27149098-27149293)
chr3 (108-269)||(8434170-8434334)
chr3 (57-92)||(5165391-5165426)
chr3 (57-92)||(8435461-8435496)
chr3 (57-92)||(27149989-27150024)
chr3 (10-47)||(14555011-14555048)
chr3 (292-324)||(3817549-3817581)
[»] chr6 (1 HSPs)
chr6 (57-270)||(31742046-31742258)
[»] chr7 (1 HSPs)
chr7 (57-176)||(48119331-48119450)
[»] chr5 (6 HSPs)
chr5 (10-49)||(37825837-37825876)
chr5 (11-49)||(37713566-37713604)
chr5 (10-49)||(37596294-37596333)
chr5 (10-49)||(37641845-37641884)
chr5 (14-47)||(37535074-37535107)
chr5 (14-42)||(37535047-37535075)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 57 - 273
Target Start/End: Complemental strand, 3817804 - 3817589
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 156  Q
    ||||||||||| |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817804 tactccctccgatcctttataaaagagacaatttgaaacttttttttt-tcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 3817706  T
Q  157 tccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtac 256  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||||||||    
T  3817705 tccatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttgatacatattccccatgttaaactactttagccgtac 3817606  T
Q  257 acacagaccaacacatg 273  Q
    |||||||||||||||||    
T  3817605 acacagaccaacacatg 3817589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 106 - 269
Target Start/End: Original strand, 5164616 - 5164779
Alignment:
Q  106 tcctttttataagaaaatctctttaaatttaaactttattaaatatgtaattccatttatacccttattaagttggagacatacaacctattcctatgca 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||    
T  5164616 tcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatttcatttatacccttattaagttggagacatgcaacctattctaatgca 5164715  T
Q  206 aatgcatttattatgatacatattccccatattgaattactttagccgtacacacagaccaaca 269  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  5164716 aatgcatttattttgatacatattccccatgttgaactactttagcagtagacacagaccaaca 5164779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 252
Target Start/End: Original strand, 27149098 - 27149293
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 156  Q
    ||||||||||||||||||||| |||||||||||| ||||        ||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  27149098 tactccctccggtcctttatacaagagacaatttaaaacttttttttggtcctttttataagaaaatctctttaaattcaaactttatcaaatatgtaat 27149197  T
Q  157 tccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagcc 252  Q
    | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||| ||||| || |||||||    
T  27149198 ttcatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttggtacatattccacatgttgaactattttagcc 27149293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 108 - 269
Target Start/End: Original strand, 8434170 - 8434334
Alignment:
Q  108 ctttttataagaaaatctctttaaatttaaactttattaaata---tgtaattccatttatacccttattaagttggagacatacaacctattcctatgc 204  Q
    ||||||||||||| | |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8434170 ctttttataagaatacctctttaaatttaaactttattaaatagtatgtaattccatttatacccttattaagttggagacatgcaacctattccaatgc 8434269  T
Q  205 aaatgcatttattatgatacatattccccatattgaattactttagccgtacacacagaccaaca 269  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  8434270 aaatgcatttagtttgatacatattccccatgttgaactactttagccgtacacacaaaccaaca 8434334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 5165426 - 5165391
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttga 92  Q
    ||||||||||||||||||||||||||||||||||||    
T  5165426 tactccctccggtcctttataaaagagacaatttga 5165391  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 8435496 - 8435461
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttga 92  Q
    ||||||||||||||||||||||||||||||||||||    
T  8435496 tactccctccggtcctttataaaagagacaatttga 8435461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 27150024 - 27149989
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttga 92  Q
    ||||||||||||||||||||||||||||||||||||    
T  27150024 tactccctccggtcctttataaaagagacaatttga 27149989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 14555011 - 14555048
Alignment:
Q  10 attatactaattgacgataacattcatttattagtatc 47  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  14555011 attatactaattgacgataacattaattcattagtatc 14555048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 3817581 - 3817549
Alignment:
Q  292 tagttttcttgttggcgggtacattcctctaaa 324  Q
    |||||||||||||||||||||||||| ||||||    
T  3817581 tagttttcttgttggcgggtacattcatctaaa 3817549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 31742046 - 31742258
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 156  Q
    |||||||| ||||| |||||| ||||||||||||||||         |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31742046 tactcccttcggtcatttatacaagagacaatttgaaa-tattttttggtcttttttataagaaaatctctttaaatttaaactttattaaatatgtaat 31742144  T
Q  157 tccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtac 256  Q
    | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  31742145 ttcatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttgatacatattccccatgttgaactactttagccgtac 31742244  T
Q  257 acacagaccaacac 270  Q
    |||||| |||||||    
T  31742245 acacaggccaacac 31742258  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 48119331 - 48119450
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 156  Q
    |||||||||||||||||| || |||||||||||||| ||        ||||||||||||||||||  ||||||||||||||||||||| ||||||  |||    
T  48119331 tactccctccggtcctttttataagagacaatttgagactttcttttggtcctttttataagaaacactctttaaatttaaactttatcaaatatacaat 48119430  T
Q  157 tccatttatacccttattaa 176  Q
    |||||||| | |||||||||    
T  48119431 tccatttaaaaccttattaa 48119450  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 37825837 - 37825876
Alignment:
Q  10 attatactaattgacgataacattcatttattagtatctt 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37825837 attatactaattgacgataacattcatttattagtatctt 37825876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 37713566 - 37713604
Alignment:
Q  11 ttatactaattgacgataacattcatttattagtatctt 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37713566 ttatactaattgacgataacattcatttattagtatctt 37713604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 37596294 - 37596333
Alignment:
Q  10 attatactaattgacgataacattcatttattagtatctt 49  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  37596294 attatactaattgacgatatcattcatttattagtatctt 37596333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 37641845 - 37641884
Alignment:
Q  10 attatactaattgacgataacattcatttattagtatctt 49  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  37641845 attatactaattgacgagaacattcatttattagtatctt 37641884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 37535074 - 37535107
Alignment:
Q  14 tactaattgacgataacattcatttattagtatc 47  Q
    |||||||||||||||||||||||| |||||||||    
T  37535074 tactaattgacgataacattcattcattagtatc 37535107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 37535047 - 37535075
Alignment:
Q  14 tactaattgacgataacattcatttatta 42  Q
    |||||||||||||||||||||||||||||    
T  37535047 tactaattgacgataacattcatttatta 37535075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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