View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_71 (Length: 335)
Name: NF19927_low_71
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 159 - 326
Target Start/End: Original strand, 30349411 - 30349577
Alignment:
| Q |
159 |
tattatgaaacacatatcagaataaactttcctctacgttaggaaagacatacataataagtgcatggaaattaaaacataatnnnnnnntgtgaacaag |
258 |
Q |
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| T |
30349411 |
tattatgaaacacatatcagaataaactttcctctacgttaggaaagacatacataataagtgcatggaaattaaaacataat-aaaaaatgtgaacaag |
30349509 |
T |
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| Q |
259 |
aataagagaatagaacattaatcagatgaaacttatttgaacaagtttagctttagtttcatgatgat |
326 |
Q |
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| T |
30349510 |
aataagagaatagaacattaataagatgaaacttatttgaacaagtttagctttagtttcatgatgat |
30349577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 30348856 - 30349005
Alignment:
| Q |
19 |
ctatgttcatcatacacacatataatcgttttgtaaaggcctgttcatcatcatattcaaacattttatcgactg-aaaagcaatgtacacgtaattaag |
117 |
Q |
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| T |
30348856 |
ctatgttcatcatacacacatataatcattttgtaaaggcttgttcatcatcatattcaaacattttatcgactgaaaaagcaatgtacacgtaattaag |
30348955 |
T |
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| Q |
118 |
tactagtnnnnnnnnnnntgttactaaggttaattttgaattattatgaa |
167 |
Q |
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| T |
30348956 |
tactagtaaaaaaaaaattgttactaaggttaattttgaattattatgaa |
30349005 |
T |
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