View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_78 (Length: 329)
Name: NF19927_low_78
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_78 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 17653793 - 17654107
Alignment:
| Q |
1 |
accgaataagataaactaaccaaataaatgtctttggcatcaagaccaagcccgaaaatcctctacaaatgagaaagcggccttgaggataaaccatgac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
17653793 |
accgaataagctaaactaaccaaataaatgtctttggcatcaagaccaagcccgaaaatcctctacaaatgagaaagtggccttgaggataa-ccatgac |
17653891 |
T |
|
| Q |
101 |
caagttagccaccaacttagcttttaaacaaagctaattagtttttaattttatctccatttccaagctattttatatttcttacgtttgagttcttca- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17653892 |
caagttagccaccaacttagcttttaaacaaagctaattagtttttaattttatctccatttccaagctattttatatttcttacgtttgagttcttcat |
17653991 |
T |
|
| Q |
200 |
--aagtttattaaatttgattcattttattcataaatcaacaagttcaataaaaatatttcaaagtaattagatttaagttagtttgattcattatgggt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17653992 |
caaagtttattaaatttgattcattttattcataaatcaacaagttcaataaaaatatttcaaagtaattagatttaagttagttcgattcattatgggt |
17654091 |
T |
|
| Q |
298 |
cattgtatatgttttg |
313 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17654092 |
cattgtatatgttttg |
17654107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University