View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19927_low_8 (Length: 680)
Name: NF19927_low_8
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 268 - 659
Target Start/End: Complemental strand, 26579229 - 26578832
Alignment:
| Q |
268 |
ggagaaaatcgacgaacatctaaaactctgacatcttgagagtgaaaccgatatagaacatgatgtgatatgttgttgatatgatgtggagaaaattgat |
367 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
26579229 |
ggagataatcgatgaacatataaaactctgacatcttgagagtgaaagcgatataaaacgtgatgtgatatgttgttgatatgatatggagaaaatcgat |
26579130 |
T |
|
| Q |
368 |
gaacattcaaaactctttaacatcttgagagagaaagggatacataacatgatatgatatgttgttgatatgatagaaaaagaaagattgaaataaaatg |
467 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
26579129 |
gaacatccaaaactctttgacatcttgagagtgaaagggatacataacatgatatgatatgttgttgatatgatagaaagagaaatattgaaataaaatg |
26579030 |
T |
|
| Q |
468 |
atgtgttgaatgagtaaagaagaattagaggcgtacatatatcattgttc-tgattttttcaatacacaaattcatannnnnnnaaaacctaaatctctc |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
26579029 |
atgtgttgaatgagtaaagaagaattagaggcgtacatatatcattattcttgattttttcaatacacaaattcat--ttttttaaaacctagatctctc |
26578932 |
T |
|
| Q |
567 |
agtt-gcnnnnnnntctcacaacgacactctggattggatctcagtcattgagtt------aaggtcgatagattcacattacaccttaactaaataatc |
659 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26578931 |
agttggaaaaaaaatctcacggcgacactctggattggatctcagtcattgagttaaggtcaaggtcgatagattcacattacaccttaacaaaataatc |
26578832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 26579414 - 26579308
Alignment:
| Q |
113 |
tagccatcatttctcaataatagaaccaattacttaccttaccaaacatatcaaccttattgttattatttaattaaacaaacccctagaggaaaaagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26579414 |
tagccatcatttctcaataatagaaccaattacttaccttaccaaacatatcaaccttattgttattatttaattaaacaaacccctagaggaaaaagaa |
26579315 |
T |
|
| Q |
213 |
gcatctg |
219 |
Q |
| |
|
||||||| |
|
|
| T |
26579314 |
gcatctg |
26579308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 26579518 - 26579454
Alignment:
| Q |
9 |
gagtgagatgaatagttgaatctgtttgttttgatgcacagaaccagacaagttctacttttcat |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26579518 |
gagtgagatgaatagttgaatctgtttgttttgatgcacagaaccagacaagttctacttttcat |
26579454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 418 - 450
Target Start/End: Original strand, 25680817 - 25680849
Alignment:
| Q |
418 |
gatatgatatgttgttgatatgatagaaaaaga |
450 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
25680817 |
gatatgatatgttgttgatatgctagaaaaaga |
25680849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University