View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_80 (Length: 324)
Name: NF19927_low_80
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 44988406 - 44988116
Alignment:
| Q |
15 |
tatcataacaacgtaaataagttgaaataagtcaatcataaaaataagaggatttcaaatgacagcattgtacaactaatgttatcgcaagtgaaaggaa |
114 |
Q |
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| T |
44988406 |
tatcataacaacgtaaataagttcaaataagtcaatc-taaacataagaggatttcaaatgacagcattgtacaactaatgttatcccaagtgaaaggaa |
44988308 |
T |
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| Q |
115 |
aacatacgtttgaatgcatccaaaccatttttgttttgaaaatgcttggcagcaaaggcaacaattataggtcgacccttcttatccaatccttgaacat |
214 |
Q |
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| T |
44988307 |
aacatacgtttgaatgcatccaaaccatttttgttttgaaaatgcttggcagcaaaggcaacaattataggtcgacccttcttatccaatccttgaacat |
44988208 |
T |
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| Q |
215 |
agatcttttcctgtgcaagatcatcagctatctctgaaggggatacagaaccacttggaacaaatgattttctccatttcatgtactttagg |
306 |
Q |
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| T |
44988207 |
agatcttttcctgtgcaagatcatcagctatctctgaaggggatacagaaccacttggaacaaatgattttctccatttcatgtactttagg |
44988116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 40123450 - 40123372
Alignment:
| Q |
113 |
aaaacatacgtttgaatgcatccaaaccatttttgttttgaaaatgcttggcagcaaaggcaacaattataggtcgacc |
191 |
Q |
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| T |
40123450 |
aaaacatacgtttgaattcatctagaccatctttcttttgaaaatgccttccaccaaagacaagaagtataggtcgacc |
40123372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 40118928 - 40118884
Alignment:
| Q |
262 |
gaaccacttggaacaaatgattttctccatttcatgtactttagg |
306 |
Q |
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| T |
40118928 |
gaaccatttggaacaaatgaatgtctccatttcaagtactttagg |
40118884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 40123301 - 40123257
Alignment:
| Q |
262 |
gaaccacttggaacaaatgattttctccatttcatgtactttagg |
306 |
Q |
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| T |
40123301 |
gaaccatttggaacaaatgaatgtctccatttcaagtactttagg |
40123257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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